Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1005 ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGAACGAGGAGGTTGGAACGGCAGCTTCCACTTCGTTTTACGGTTCATTAGCAGCTGACGGGAACAATCATATGGGGAGAACAGATAGAGTTTTTGATTGGGATGGGAGTGGTGATCACAAGATGAACACGCAATCGAATCGGACAGGGAACTTGTATCCATGGATTGGTTTGGCGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCACCTACGGTCTCATACGCGGCAGCAAATGAGATCGATGCATTGGGATATAACCACGACGATGAATTAAGAGTGAAAGCCGTGGGAAGTGGAGGTTCGTCAGGGAAAAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAGTTGCAGCTGGCCTTGGCTCTCAGGCTTTCTTCGGAGGCCACTTGTGCCTATGATCCCAACTTTATGGATCTGATACCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGTTGAGGCCATATCGCATCGATTTTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCACGGGATGAACCCTTATGTATGGTCTTTATGCACCAATCGGCAAGAGGATGGCCGTATACCATCATTTGAGTCTCTGAAGACAGTTGATTCCAGCATTGGTTCATCAATTGAAGTAGTTTTGATAGATAAGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATAATATTTCTTCTAGCTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCGAAGCTGGTGAGCAATCACATGGGGGGTTCAATTTCTGAGGGAGAAGATGTATTGGTTTCCTCCTGGAGGGAATACAGCGATGACTTAAAAGAATGTTTGGGATCTGTTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGGGCTCTTTTATTCAAAGTGCTAGCTGATTCAATTGATTTGCCCTGTCGAATTGCCAAGGGCTGTAAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTAGGGCTTGATAGGGAATATTTCATCGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCGTTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGTCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGTGAATGTTGTATCTGGGAAGGATGCCGCATTCTCAGTCTATCAAAGACAGGTCAATAGGAAGGATGTAGATGGTAAAAACATAGTGCTTATTGGTGACAGGGATAGAAGTTCTCCGATATTGAATCCAGAAGCTCCTTCTCAATATTGTGTACAGTCTACCCCTTTTGTAGAAAATGTAGTCCCTTTAAACCAGATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGTATTGTCTCCTCTAAGGATGGATCCTGCTAAGAATTTATCATTAGTTGAGGGTAGACAACTGGTTGAAACTCCAAATGATCTTTCCCTTGGCATAGAAGATTTGGTTATTCCACCGAATGATCTTGTTTTGAGGGAGAAAATTGGAGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCATGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGGCCTACATGCAGAACGTTTTGATGAATTTATCAGGGAGGTTGCCATAATGAAATGTCTACGACATCCGAACATTGTTCTCTTTATGGGTGCAGTCATTGAGCCTCCAAACTTATCCATTGTCACGGAATATTTATCAAGAGGTAGTTTGCACAGGCTTTTGCATAGACCTGGGGCACGAGAAGTCTTAGATGAGAGACGTCGGTTAAGCATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGTAACCCCCCAATTGTTCATCGTGATTTAAAATCTCCAAATCTTTTGGTCGATAAGAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGCTTAAAGGCACACACATTTCTTTCGTCAAAATCAGCTGCTGGAACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAGATGAGAAATCGGATGTTTATAGCTTTGGTGTGATATTGTGGGAGCTGGCTACATTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTGGGTTTTAAAGGCAGAAGGCTTGAGATCCCACATGATTTAAATCCTCGAGTTGCTACTATCATAGAGGCTTGCTTTGCCAGTGAGCCCCGGGAACGACCATCCTTTTATGAAATAATGGAATCGTTGAAGCCATTAACCATACCTGCTACGCCTCATCAAGTTCGCTCAAATACTCAATGA 2493 43.44 MEMPGRRSDYSLLSQIPNEEVGTAASTSFYGSLAADGNNHMGRTDRVFDWDGSGDHKMNTQSNRTGNLYPWIGLARHSSGSSYDDSSLSSDYYAPTVSYAAANEIDALGYNHDDELRVKAVGSGGSSGKSWAQQTEESYQLQLALALRLSSEATCAYDPNFMDLIPDEAALRSLSSSVEAISHRFWVNGCMSYFEKVPDGFYLIHGMNPYVWSLCTNRQEDGRIPSFESLKTVDSSIGSSIEVVLIDKHSDASLKELQNRVHNISSSCITTKEVADHLAKLVSNHMGGSISEGEDVLVSSWREYSDDLKECLGSVVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIAKGCKYCTRDDASSCLVRLGLDREYFIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSVNVVSGKDAAFSVYQRQVNRKDVDGKNIVLIGDRDRSSPILNPEAPSQYCVQSTPFVENVVPLNQISQIGSRDSEPLLVLSPLRMDPAKNLSLVEGRQLVETPNDLSLGIEDLVIPPNDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQGLHAERFDEFIREVAIMKCLRHPNIVLFMGAVIEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSDEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGRRLEIPHDLNPRVATIIEACFASEPRERPSFYEIMESLKPLTIPATPHQVRSNTQ 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 64668992 64679509 + Hsped.04g10050.1 Hepe04g1005 568143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1005 830 PRINTS Tyrosine kinase catalytic domain signature 784 806 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 PRINTS Tyrosine kinase catalytic domain signature 721 731 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 PRINTS Tyrosine kinase catalytic domain signature 740 762 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 PRINTS Tyrosine kinase catalytic domain signature 674 692 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 PRINTS Tyrosine kinase catalytic domain signature 633 646 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 SMART serkin_6 559 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 CDD STKc_MAP3K-like 565 813 - -
Hepe04g1005 830 ProSitePatterns Protein kinases ATP-binding region signature. 565 586 IPR017441 GO:0005524(InterPro)
Hepe04g1005 830 SUPERFAMILY Protein kinase-like (PK-like) 543 813 IPR011009 -
Hepe04g1005 830 Gene3D Transferase(Phosphotransferase) domain 1 638 821 - -
Hepe04g1005 830 PANTHER SERINE-THREONINE PROTEIN KINASE 183 814 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Hepe04g1005 830 FunFam Serine/threonine-protein kinase CTR1 638 823 - -
Hepe04g1005 830 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Hepe04g1005 830 Pfam Protein tyrosine and serine/threonine kinase 560 813 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 ProSiteProfiles Protein kinase domain profile. 559 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1005 830 FunFam Serine/threonine-protein kinase isoform 1 550 637 - -
Hepe04g1005 830 Gene3D Phosphorylase Kinase; domain 1 552 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2174 Hepe-Chr1:86381103 Hepe04g1005 Hepe-Chr4:64668992 7.36e-35 dispersed
Hepe01g2175 Hepe-Chr1:86382069 Hepe04g1005 Hepe-Chr4:64668992 1.07e-148 dispersed
Hepe04g1005 Hepe-Chr4:64668992 Hepe07g2360 Hepe-Chr7:67958237 5.08e-137 dispersed
Hepe04g1005 Hepe-Chr4:64668992 Hepe05g0338 Hepe-Chr5:4127975 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72733 PF07714 PK_Tyr_Ser-Thr 1.30E-68 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1005 K14510 - csv:101208800 1400.57