Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1012 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATCAAACCTGTTCAAAGTAAGGTAGGATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGAAGACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAACTTTTTGAGTCAATTAGTATCAAAAACGCTTCCAAGAGCTTAGGTCATTCACAAGTAGATGCACTGAGAAAAAGTACACTAAAGAAGCCAATAACTGTTGGCATACCTCGTTCACCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTCAGGGAACTATGCCTTTCAAAGGCATCTGAAATGGCTGCTATGAAAAGATCATCAAAATCAGCTAGCTCTTCAAGAAACTCAGAAGCTGGGCGGATCAAGACATTGTACAATTCAGTTATGGTTGAAGCTACTCAGTCAGGCTCTTCTTCAGATAATGGTAAGGGGGGAAGTGTGGTTGAAATTTCCTTGGTTCCAGAGGAAAAAAATTTGAACTTTGAGAAGAGACTTGAGCATGTCCAGACATCTGCTGTTAAATCCCCGGCTGAAAGTGCTCATTCTTCTCCTCAGTTACCAGTTGCGAAAACACAAAATTCTATTGAGGTTGTTACTGTGGAGAAAACCGTCAATACCACTTTGTCAAGGAAAATTGGGTCTCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAGGAGTCCATTACTCCACCATCTATATCTTCTTGCACTATTGGCAAGGTTTTAGAGAAAGAGAAGAAAACTCTTGCCTCGAGCAAGGTGGCAAATAAAGTGTCATCATTGAAGCCAGGACGGAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTACTGCCAATAAGGTAAGCAAGTTATCTAGAAGTACCTCCCGGTCTGTCAAACCAGTTATTAGGAACAAGGGACTGACTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACTTACAATGAAATCAATGGTGATATGGATCCTAGTAAAAAGAAGTTAATATGTGAGAGGTGCCACTGTGCATTGAATAGTGCAACTAAAGACTCAAAGAAGGGCTCTGCATCCCCGTTTAGTGGTCTTGGTACTGATGTAAACATGACTAATTCAAAATCTGGTATTAACAAATCAGGCATCAATGTGGATGGCAAGGCTTCTGATGTTAGAGTAAAAAGAAATACGAAGGTACGAGATAAGGGCGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGCGAGTACAGTAGCAGTACGACGAGTATTATAAGTGATGACAGCAATGGGCATGGATCCAGTAATGGTAACAGACCTCACATGTCGAAAGATGTTAGGTGGGAAGCCATACGCCATGCACAATTGCAGCATGGGGTCCTTAGCTTGCGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGGGACATTGGAACCGTTTATCTTGCTGAGCTAACTGGGACTAATTGCCTATTTGCCATTAAGGTCATGGACAATGAGTTTCTAGCAAGACGGAAGAAAATGCCTAGAGCGCAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCAACACTTTATGTTCAATTTACTTCAGATAATCTATCGTGTCTTGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGACAGAAGCAGCTAGTCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTCCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTAATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACGGTCAGTCCAACACTCCTGAAGTCATCATCCTTCAATGCAGACGCAGTGAAAACATCAGGTCCATGTACAGATTCTAGTTGTGCTGAGCCGTTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCAAGGTTTTTACCTGCTGCTGCCAAAACAAGGAAGCCAAAACCTGACCCCACAACACAGTTCAGGTCACTACCCCAGCTCGTTGCTGAACCCACTGATGCACGATCCAATTCCTTTGTCGGGACTCATGAATATTTGGCTCCCGAGATCATTAAAGGAGAGGGCCATGGAGCTGCAGTGGATTGGTGGACGTTTGGTGTTTTTCTATATGAGCTTCTGTATGGTAGAACCCCTTTCAAGGGTTCCAATAATGAAGAAACATTGGCCAATGTAGTATTGCAGGGCCTCAGTTTTCCTGACAGCCCAATCGTTAGTTTCCAAGCAAGGGATCTTATCCGAGGGCTGTTGGTAAAAGAACCTGAAAATCGATTCGGGACAGAGAAAGGGGCTGCCGAAATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGTTGTGCAATACCTCCAGAACTTCCCGAATTATGTGATATGGACATTCCAAGCATGATTGCTCAACAAAACAAGTTCAGGTATTTGGAAAGCAAGTCCACTGGAGAGCACCTAGAGTTCGAATTGTTTTAG 2601 42.87 MGSGTCEIVEAREEIKPVQSKVGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVDALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAAMKRSSKSASSSRNSEAGRIKTLYNSVMVEATQSGSSSDNGKGGSVVEISLVPEEKNLNFEKRLEHVQTSAVKSPAESAHSSPQLPVAKTQNSIEVVTVEKTVNTTLSRKIGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKTLASSKVANKVSSLKPGRKGRLQTASSSKLGTANKVSKLSRSTSRSVKPVIRNKGLTKKKVKQDLSSPTCSSSTYNEINGDMDPSKKKLICERCHCALNSATKDSKKGSASPFSGLGTDVNMTNSKSGINKSGINVDGKASDVRVKRNTKVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGSSNGNRPHMSKDVRWEAIRHAQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELTGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLVRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVSPTLLKSSSFNADAVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKPKPDPTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQGLSFPDSPIVSFQARDLIRGLLVKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPELCDMDIPSMIAQQNKFRYLESKSTGEHLEFELF 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 64757765 64762995 - Hsped.04g10120.1 Hepe04g1012 568150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1012 866 FunFam serine/threonine-protein kinase D6PK-like 566 633 - -
Hepe04g1012 866 MobiDBLite consensus disorder prediction 423 457 - -
Hepe04g1012 866 Pfam Protein kinase domain 712 815 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1012 866 Pfam Protein kinase domain 483 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1012 866 Gene3D Phosphorylase Kinase; domain 1 480 561 - -
Hepe04g1012 866 PANTHER FLIPPASE KINASE 1-RELATED 300 840 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Hepe04g1012 866 MobiDBLite consensus disorder prediction 367 458 - -
Hepe04g1012 866 MobiDBLite consensus disorder prediction 284 315 - -
Hepe04g1012 866 MobiDBLite consensus disorder prediction 270 337 - -
Hepe04g1012 866 FunFam serine/threonine-protein kinase D6PK-like 710 833 - -
Hepe04g1012 866 Gene3D Transferase(Phosphotransferase) domain 1 708 833 - -
Hepe04g1012 866 ProSiteProfiles Protein kinase domain profile. 482 815 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1012 866 Gene3D Transferase(Phosphotransferase) domain 1 562 631 - -
Hepe04g1012 866 SUPERFAMILY Protein kinase-like (PK-like) 457 832 IPR011009 -
Hepe04g1012 866 MobiDBLite consensus disorder prediction 367 399 - -
Hepe04g1012 866 FunFam Serine/threonine-protein kinase D6PK-like 480 565 - -
Hepe04g1012 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1012 866 MobiDBLite consensus disorder prediction 405 422 - -
Hepe04g1012 866 CDD STKc_phototropin_like 480 836 - -
Hepe04g1012 866 SMART serkin_6 482 815 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1012 Hepe-Chr4:64757765 Hepe08g0238 Hepe-Chr8:2139715 1.09e-230 dispersed
Hepe03g1337 Hepe-Chr3:69605927 Hepe04g1012 Hepe-Chr4:64757765 1.39e-63 transposed
Hepe04g1012 Hepe-Chr4:64757765 Hepe08g0237 Hepe-Chr8:2119701 1.98e-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72734 PF00069 Pkinase 4.70E-36 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1012 - - - 0.0