Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1023 ATGGCGGAAGAGCACAGATGCCAAGCACCGGAAGGTCACCGTCTCTGCGCTAATAATTGCGGTTTCTTTGGTAGTCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTCAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCTGCTCTCTCAGCTTCATCTCCATCTCCTCCTTCTCCCTCCTCTTCCCCAATCGATCCTCCTCCTCCTCCTCCTCCTCTTCTCGTTTCCTCTGTTGTAGCCGCCTTGTCCTCGCCGGACGCTCCCGTCACAGATCTGACCATCCCGCCCCTCGCAGCGGCCGGATCTGAGGCTTCGAACCCTAACCCTAACCCGAACCCGAATCGATGTTCGTCGTGCCGGAAGAAGGTGGGTTTGACTGGGTTTAGATGCAGATGCGGAACCACGTTCTGTGGGACTCATAGGTACCCGGAGAAACACGGTTGCACCTTCGATTTCAAGTCAATCGGAAGAGAGGAGATCGCACGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAGAGGATTTGA 552 54.53 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSPSPPSPSSSPIDPPPPPPPLLVSSVVAALSSPDAPVTDLTIPPLAAAGSEASNPNPNPNPNRCSSCRKKVGLTGFRCRCGTTFCGTHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 64878316 64879794 + Hsped.04g10230.1 Hepe04g1023 568161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1023 183 FunFam Zinc finger AN1-type containing 6 103 179 - -
Hepe04g1023 183 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Hepe04g1023 183 SMART AN1_Zf_4 124 161 IPR000058 GO:0008270(InterPro)
Hepe04g1023 183 MobiDBLite consensus disorder prediction 48 63 - -
Hepe04g1023 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Hepe04g1023 183 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Hepe04g1023 183 Gene3D - 105 179 IPR035896 -
Hepe04g1023 183 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Hepe04g1023 183 Gene3D - 1 69 - -
Hepe04g1023 183 MobiDBLite consensus disorder prediction 46 83 - -
Hepe04g1023 183 ProSiteProfiles Zinc finger AN1-type profile. 118 164 IPR000058 GO:0008270(InterPro)
Hepe04g1023 183 Pfam AN1-like Zinc finger 124 160 IPR000058 GO:0008270(InterPro)
Hepe04g1023 183 MobiDBLite consensus disorder prediction 64 83 - -
Hepe04g1023 183 SUPERFAMILY AN1-like Zinc finger 110 178 IPR035896 -
Hepe04g1023 183 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 183 IPR050652 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1023 Hepe-Chr4:64878316 Hepe08g0219 Hepe-Chr8:1948729 9.83e-57 dispersed
Hepe04g1023 Hepe-Chr4:64878316 Hepe06g1619 Hepe-Chr6:67041129 5.01e-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1023 - - - 0.0