Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1065 ATGCGTGGCGGCTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCGCACTCGCAAACTGCCCAGATCCTGCCTCCTCTCAAGCGCCACCTTGCTTTCGACTCGACTAAGCCACCCTTCCTTCCTCCTGGTCACTATTACCAGTTTGGTGGCGCTGGCGGTTCTTCCAATGTTTTTGATCAACAACCTGATGCCATCGTTGTTAAACCTCTCAAACCAAAGCAGAAGGGTGTCATGTATAATAATGTGGTCCAATCTAATGACTGCATTTATGATCAGGGATCTTCAAAAGATGCTCTAAGTTCTGTACAAACACCTGTGTCTGCAAAAGGAGGAAGGGTGTACAGTAAGTCAAAGGCTTCAAGGAGAACTACATCTGGGCCTCAAACACCCATCTCAGACACTAGCACTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGATTTGAACAAAGCTGCAGAAACTTTGATGGTGCAGAAGAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATGCACAAATTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATGTCCAAAAATGGCTCTTTGTGACAGAGGAAGACATTAAAAATCTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAACTGTTGATTATACACAGAGAAGATATAGAATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGTTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAATTTGAACCTCAGCATCTGTCCCAGCACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTCTTCCTTCAGAAGTTGACAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCTTGGGATCAGTCAGATATTCCTCATGACTTTTTAATACCTGATGTTAGTGCCCAAAGGCCAAGATCAGCAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATGTTAACTTAAGACGGAGGTGA 1419 42.35 MRGGSRAPNRSEPLPHSQTAQILPPLKRHLAFDSTKPPFLPPGHYYQFGGAGGSSNVFDQQPDAIVVKPLKPKQKGVMYNNVVQSNDCIYDQGSSKDALSSVQTPVSAKGGRVYSKSKASRRTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLMVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNAQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVLQERLRNLSEDENVQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDETVDYTQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEFEPQHLSQHSSSCDVNGSNEFPGGMMKILPSEVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDIPHDFLIPDVSAQRPRSASPHSETAEAPSDVNLRRR 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 65315359 65323128 - Hsped.04g10650.1 Hepe04g1065 568203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1065 472 CDD E2F_DD 228 329 IPR032198 GO:0046983(InterPro)
Hepe04g1065 472 MobiDBLite consensus disorder prediction 447 472 - -
Hepe04g1065 472 FunFam E2F transcription factor 1 141 214 - -
Hepe04g1065 472 MobiDBLite consensus disorder prediction 117 138 - -
Hepe04g1065 472 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe04g1065 472 SUPERFAMILY E2F-DP heterodimerization region 226 329 IPR037241 -
Hepe04g1065 472 MobiDBLite consensus disorder prediction 1 22 - -
Hepe04g1065 472 Coils Coil 232 259 - -
Hepe04g1065 472 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe04g1065 472 Gene3D - 141 215 IPR036388 -
Hepe04g1065 472 MobiDBLite consensus disorder prediction 110 138 - -
Hepe04g1065 472 SUPERFAMILY Winged helix DNA-binding domain 147 210 IPR036390 -
Hepe04g1065 472 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983(InterPro)
Hepe04g1065 472 Gene3D - 219 329 - -
Hepe04g1065 472 PANTHER TRANSCRIPTION FACTOR E2F 75 426 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1065 K06620 - - csv:101212480 743.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1065 Hepe-Chr4:65315359 Hepe07g2253 Hepe-Chr7:66935054 1.82e-10 dispersed
Hepe10g0142 Hepe-Chr10:1479295 Hepe04g1065 Hepe-Chr4:65315359 3.46e-69 transposed
Hepe04g1065 Hepe-Chr4:65315359 Hepe08g0198 Hepe-Chr8:1815151 2.50e-161 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g2253 . 3 377 E2F-DP Transcription Factor Family AT3G48160 56.1 6.2e-101 364.8
Hepe04g1065 . 11 433 E2F-DP Transcription Factor Family AT2G36010 57.1 5.5e-120 428.3
Hepe08g0198 . 21 419 E2F-DP Transcription Factor Family AT2G36010 56.3 9.7e-117 417.5
Hepe08g0198 . 20 419 E2F-DP Transcription Factor Family AT5G22220 59.8 8.1e-113 404.4
Hepe10g0142 . 148 404 E2F-DP Transcription Factor Family AT1G47870 52.9 7.0e-65 245.0
Hepe08g0198 . 139 416 E2F-DP Transcription Factor Family AT1G47870 50.7 1.5e-62 237.3
Hepe08g0198 . 20 419 E2F-DP Transcription Factor Family AT5G22220 59.8 8.1e-113 404.4
Hepe04g1065 . 11 433 E2F-DP Transcription Factor Family AT2G36010 57.1 5.5e-120 428.3
Hepe08g0198 . 21 419 E2F-DP Transcription Factor Family AT2G36010 56.3 9.7e-117 417.5
Hepe10g0142 . 148 404 E2F-DP Transcription Factor Family AT1G47870 52.9 7.0e-65 245.0
Hepe08g0198 . 139 416 E2F-DP Transcription Factor Family AT1G47870 50.7 1.5e-62 237.3
Hepe07g2253 . 3 377 E2F-DP Transcription Factor Family AT3G48160 56.1 6.2e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55398 PF16421 E2F_CC-MB 3.30E-33 No_clan Hepe TF