Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1065 ATGCGTGGCGGCTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCGCACTCGCAAACTGCCCAGATCCTGCCTCCTCTCAAGCGCCACCTTGCTTTCGACTCGACTAAGCCACCCTTCCTTCCTCCTGGTCACTATTACCAGTTTGGTGGCGCTGGCGGTTCTTCCAATGTTTTTGATCAACAACCTGATGCCATCGTTGTTAAACCTCTCAAACCAAAGCAGAAGGGTGTCATGTATAATAATGTGGTCCAATCTAATGACTGCATTTATGATCAGGGATCTTCAAAAGATGCTCTAAGTTCTGTACAAACACCTGTGTCTGCAAAAGGAGGAAGGGTGTACAGTAAGTCAAAGGCTTCAAGGAGAACTACATCTGGGCCTCAAACACCCATCTCAGACACTAGCACTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGATTTGAACAAAGCTGCAGAAACTTTGATGGTGCAGAAGAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATGCACAAATTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATGTCCAAAAATGGCTCTTTGTGACAGAGGAAGACATTAAAAATCTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAACTGTTGATTATACACAGAGAAGATATAGAATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGTTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAATTTGAACCTCAGCATCTGTCCCAGCACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTCTTCCTTCAGAAGTTGACAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCTTGGGATCAGTCAGATATTCCTCATGACTTTTTAATACCTGATGTTAGTGCCCAAAGGCCAAGATCAGCAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATGTTAACTTAAGACGGAGGTGA 1419 42.35 MRGGSRAPNRSEPLPHSQTAQILPPLKRHLAFDSTKPPFLPPGHYYQFGGAGGSSNVFDQQPDAIVVKPLKPKQKGVMYNNVVQSNDCIYDQGSSKDALSSVQTPVSAKGGRVYSKSKASRRTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLMVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNAQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVLQERLRNLSEDENVQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDETVDYTQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEFEPQHLSQHSSSCDVNGSNEFPGGMMKILPSEVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDIPHDFLIPDVSAQRPRSASPHSETAEAPSDVNLRRR 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 65315359 65323128 - Hsped.04g10650.1 Hepe04g1065 568203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1065 472 CDD E2F_DD 228 329 IPR032198 GO:0046983(InterPro)
Hepe04g1065 472 MobiDBLite consensus disorder prediction 447 472 - -
Hepe04g1065 472 FunFam E2F transcription factor 1 141 214 - -
Hepe04g1065 472 MobiDBLite consensus disorder prediction 117 138 - -
Hepe04g1065 472 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe04g1065 472 SUPERFAMILY E2F-DP heterodimerization region 226 329 IPR037241 -
Hepe04g1065 472 MobiDBLite consensus disorder prediction 1 22 - -
Hepe04g1065 472 Coils Coil 232 259 - -
Hepe04g1065 472 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe04g1065 472 Gene3D - 141 215 IPR036388 -
Hepe04g1065 472 MobiDBLite consensus disorder prediction 110 138 - -
Hepe04g1065 472 SUPERFAMILY Winged helix DNA-binding domain 147 210 IPR036390 -
Hepe04g1065 472 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983(InterPro)
Hepe04g1065 472 Gene3D - 219 329 - -
Hepe04g1065 472 PANTHER TRANSCRIPTION FACTOR E2F 75 426 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1065 Hepe-Chr4:65315359 Hepe07g2253 Hepe-Chr7:66935054 1.82e-10 dispersed
Hepe10g0142 Hepe-Chr10:1479295 Hepe04g1065 Hepe-Chr4:65315359 3.46e-69 transposed
Hepe04g1065 Hepe-Chr4:65315359 Hepe08g0198 Hepe-Chr8:1815151 2.50e-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55398 PF16421 E2F_CC-MB 3.30E-33 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1065 K06620 - csv:101212480 743.421