Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1072 ATGGGAGTTCCTCAGGCGATGGAAATTCTGACCGGGAGAGCTGCACTTATCAAAGAGTCGCTGCAGAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTCGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAGCCGCAATGCGCCCTACTCAGATAAGAACTCATTCGATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGCATGCAGACAGTATACTGGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGGCCACATGAGGACTTAGAAATGTATTTGGAAGCAATCGATCAACTACGAAGCACAAATCGCTACTTTACTGGGCACAAAAATTTCAAAAGTAACGATGCGATTCTTATCCATACAAGCAACTTGCTTATTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTAGCGAATTACAGTAAGCCAGTGGAACCCGATCGTCTTTTCGATTGCCTCCCCAACTCTTTGCGTCCATCATCAGCATCTGGGCACCATGGTGATGGTAGCAAAAATAGTTCTGACCATCCCAACAAAAGCTTAGAAGCTGCCATCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTAGCTGGCCATCAGCAGCAACTGTTTAGAATATACAGGGAAACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGAGGCTTACCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAACTGCTGTTTGCTGGGGAAAGGAAAATCTGTGATCAAATATTTGATGGTCCAGACTCTCTCCTGGATCAATGCTTCGCAGATGTGACTACAAACAGTGTGTCAATGCTACTAAGTTTTGGAGAAGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTTTGAAATTATGCGAGAACTGCAATCTGAGATTGAAGTACTTTTTGGAAATAAAGCATGCATTGAAATGCGGGATTCTGCATTGAGCTTAACACAACGCCTTGCCGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAACTACGTCAAGTTTTTATTTGACTACCGATCTACTTTGAAGCAACTATTCCAAGACTTTGACGCTGGTGATCCAGATGCTCAGTTAGCAGTGGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGATGGAAAATCTAAGCAATATAGGGATCCTGCATTAACTCAATTATTTCTGATGAACAATATTCACTATATAGTGAGATCTGTCCGAAGATCGGAAGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACTGTTCAGGGCTCTGGCAGTGGTGGTGCTTCAGCAGACGCTAGCGGCGGACTTTCAAGAGCTATGGTGAAAGATAGGTTCAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAGTCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCAGTAGCTGAAGTCTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGGCCTTTGGTTGATAATGGGAAAAATCCTCAAAAATGCACCAGATATTCACCCGAGGATCTCGAGCGTATGCTAAATGAATTTTTCGAGGGCAAGACATTCGGTGAACAAAAGCGCTAG 1914 44.1 MGVPQAMEILTGRAALIKESLQKSQNVTENMVSILGSFDYRLSALEAAMRPTQIRTHSIRRAHENIDKTLKHADSILAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGHKNFKSNDAILIHTSNLLIKAISKLEDEFRQLLANYSKPVEPDRLFDCLPNSLRPSSASGHHGDGSKNSSDHPNKSLEAAIFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRETRASVLEQSLRKLGVERLTKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGPDSLLDQCFADVTTNSVSMLLSFGEAIAKSKRSPEKLFVLLDMFEIMRELQSEIEVLFGNKACIEMRDSALSLTQRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYRSTLKQLFQDFDAGDPDAQLAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQGSGSGGASADASGGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPLVDNGKNPQKCTRYSPEDLERMLNEFFEGKTFGEQKR 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 65363907 65372911 - Hsped.04g10720.1 Hepe04g1072 568210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1072 637 Gene3D Exocyst complex component Exo70 74 637 - -
Hepe04g1072 637 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 630 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Hepe04g1072 637 Pfam Exocyst complex component Exo70 N-terminal 69 151 - -
Hepe04g1072 637 SUPERFAMILY Cullin repeat-like 75 628 IPR016159 -
Hepe04g1072 637 Pfam Exo70 exocyst complex subunit C-terminal 272 625 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1072 K07195 - - csv:105436019 1159.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1104 Hepe-Chr1:75944957 Hepe04g1072 Hepe-Chr4:65363907 0.0 dispersed
Hepe04g1072 Hepe-Chr4:65363907 Hepe10g1367 Hepe-Chr10:49930044 7.80e-107 dispersed
Hepe04g1072 Hepe-Chr4:65363907 Hepe09g0051 Hepe-Chr9:422913 1.05e-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g903 Blo01g01242 . . . . . . . . . . Cma07g00826 Car03g01010 Car07g00813 Sed14g0274 Cpe10g00315 . Bhi03g01779 Tan03g1260 Cmetu08g1948 . Hepe04g1072 . . . . . . . . . . . Cone13ag1144 Cone19ag1123 Lsi01g01185 Csa06g02721 Chy08g00976 . . . . . . . Bma01g02005 . . Cmo03g01110 Cmo07g00855 . . . . . Cpe19g00500 . . . . . . . . . . . . . . . . . Cme08g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1104 . 41 684 EXO70 exocyst subunit family AT5G03540 76.1 1.4e-283 972.2
Hepe04g1072 . 1 637 EXO70 exocyst subunit family AT5G03540 69.8 1.3e-257 885.9
Hepe04g1072 . 1 637 EXO70 exocyst subunit family AT5G52340 78.2 2.8e-289 991.1
Hepe01g1104 . 43 684 EXO70 exocyst subunit family AT5G52340 73.5 6.4e-270 926.8
Hepe04g1072 . 145 630 EXO70 exocyst subunit family AT5G52350 62.2 3.7e-171 598.6
Hepe01g1104 . 178 684 EXO70 exocyst subunit family AT5G52350 58.0 3.4e-164 575.5
Hepe10g1367 . 1 630 EXO70 exocyst subunit family AT5G58430 67.1 1.0e-248 856.3
Hepe10g1367 . 1 623 EXO70 exocyst subunit family AT1G07000 52.7 9.3e-178 620.5
Hepe05g1167 . 58 661 EXO70 exocyst subunit family AT5G13150 52.1 8.3e-172 600.9
Hepe02g2406 . 115 722 EXO70 exocyst subunit family AT5G13990 52.2 8.5e-183 637.5
Hepe05g0540 . 50 353 EXO70 exocyst subunit family AT5G13990 54.7 2.3e-95 347.1
Hepe02g1550 . 9 606 EXO70 exocyst subunit family AT1G72470 64.4 1.5e-213 739.6
Hepe02g1550 . 9 604 EXO70 exocyst subunit family AT1G54090 61.2 6.0e-204 707.6
Hepe02g1550 . 9 605 EXO70 exocyst subunit family AT3G14090 64.2 1.1e-218 756.5
Hepe07g2107 . 19 656 EXO70 exocyst subunit family AT5G50380 63.4 7.0e-230 793.9
Hepe09g0051 . 14 651 EXO70 exocyst subunit family AT5G50380 62.0 1.8e-225 779.2
Hepe10g0323 . 16 682 EXO70 exocyst subunit family AT4G31540 73.4 1.8e-294 1008.4
Hepe01g0852 . 54 612 EXO70 exocyst subunit family AT2G39380 50.2 6.7e-150 528.1
Hepe05g0203 . 36 638 EXO70 exocyst subunit family AT3G09520 54.2 1.4e-176 616.7
Hepe05g0204 . 1 638 EXO70 exocyst subunit family AT3G09520 51.5 1.6e-172 603.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74