Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1076 ATGAACGATCTGTTTTCCTCCGATTCCTTCCGCAGAGATCAGCCGCACCGCCATGACACCGTCGACCCCACCGCCGCGCCGTCGTCAACGACGATCAATCTCAACAGCTTCTTCGAGGACGTCGAATCCGTGAAGGCGGAATTGACGGAGCTCGAGCGCGTTTATCGAAGCCTCCAGAATTCTCACGAACAGAGCAAGACTCTGCACAACTCCAAGGCGATTAAGGATCTCCGATCTCGAATGGAATCGGATGTGACTTTGGCTCTCAAGAAGGCTAGGTTTATCAAGCTCCGATTGGAGGAACTCGACCGCTCCAACGCCGAGAACCGGAATCTTCCTGGTTGTGGCCATGGCTCCTCCGCCGACCGGTCCAGAAGCTCCGTCGTCAATGGATTGAGGAAGAATCTGTGTGACTCGATGGAGAGTTTCAACAGATTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACGATTCAACGAAGATATTTCACGATTACAGGGGAGAATCCGGATGAGAAGACTGTTGATTTGTTGATCTCTACAGGTGAAAGCGAGACATTCTTGCAAAAGGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTAGAAACAATCCAAGAGATTCAAGAAAGGCATGACGCAGTGAAAGACATAGAAAAAAATCTGAAAGAGTTGCACCAAGTGTTTATGGACATGGCGGTACTGGTCCAAGCGCAGGGGCAACAATTGGACGACATCGAGAGCCAAGTCACTCGAGCCAACTCCGCCGTCAGGCGCGGCACCACCGAGCTACAAACCGCAAGATTCTACCAGAAAAATACTCGAAAATGGATCTGTATCGGTGTCAGCATTTTTATAGTGATCCTCCTCATCATTATCCTTTCCGTCGTTTTGGGAACGAAAAAATAA 906 49.23 MNDLFSSDSFRRDQPHRHDTVDPTAAPSSTTINLNSFFEDVESVKAELTELERVYRSLQNSHEQSKTLHNSKAIKDLRSRMESDVTLALKKARFIKLRLEELDRSNAENRNLPGCGHGSSADRSRSSVVNGLRKNLCDSMESFNRLREEISSTYKETIQRRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIEKNLKELHQVFMDMAVLVQAQGQQLDDIESQVTRANSAVRRGTTELQTARFYQKNTRKWICIGVSIFIVILLIIILSVVLGTKK 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 65401673 65404754 + Hsped.04g10760.1 Hepe04g1076 568214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1076 301 PANTHER SYNTAXIN 36 287 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Hepe04g1076 301 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe04g1076 301 SMART tSNARE_6 199 266 IPR000727 -
Hepe04g1076 301 Gene3D - 199 298 - -
Hepe04g1076 301 Gene3D - 32 164 - -
Hepe04g1076 301 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Hepe04g1076 301 Pfam SNARE domain 241 292 IPR000727 -
Hepe04g1076 301 Coils Coil 34 61 - -
Hepe04g1076 301 CDD SynN 34 191 IPR006011 GO:0016020(InterPro)
Hepe04g1076 301 Pfam Syntaxin 36 239 IPR006011 GO:0016020(InterPro)
Hepe04g1076 301 SMART SynN_4 29 155 IPR006011 GO:0016020(InterPro)
Hepe04g1076 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Hepe04g1076 301 FunFam Syntaxin 132 197 297 - -
Hepe04g1076 301 CDD SNARE_syntaxin1-like 203 265 - -
Hepe04g1076 301 Coils Coil 204 224 - -
Hepe04g1076 301 MobiDBLite consensus disorder prediction 1 28 - -
Hepe04g1076 301 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1076 Hepe-Chr4:65401673 Hepe07g1958 Hepe-Chr7:63486193 7.16e-105 dispersed
Hepe02g2765 Hepe-Chr2:76232596 Hepe04g1076 Hepe-Chr4:65401673 3.31e-78 transposed
Hepe04g1076 Hepe-Chr4:65401673 Hepe05g0449 Hepe-Chr5:5903970 1.04e-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1076 K08486 - csv:101213443 482.256