Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1077 ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTCTCCTCAACCAACATCGGCGGATTCGGATACGGAATCGGCGTCTCGCTAGGGATTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAACCGGCCTATCCTCGACCGCCGTGATTCAGAGTACCGCCAATCGCTCGCCGCAGCAGGAAGACGCCGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTATGAGTTATCCGAAATTGCTGTATTCGGAGGTGAAACTAATTCAGAAGAACGATTCGAGTAGTGCTTCTTGTTGTTGTTCGATCTGTTTGGCCGATTACAAGAACTCTGATGTTCTTCGGATTTTGCCTGATTGCGGCCATTTGTTTCACCTCAAATGCGTCGATCCGTGGTTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCGAGCCGCCGCGATTGA 519 53.37 MNNGTADSGGFLSSTNIGGFGYGIGVSLGILILITTILLASYYCTRTGLSSTAVIQSTANRSPQQEDAAVVVEIGLDQETIMSYPKLLYSEVKLIQKNDSSSASCCCSICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 65408928 65409735 + Hsped.04g10770.1 Hepe04g1077 568215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1077 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 166 IPR045899 -
Hepe04g1077 172 Pfam Ring finger domain 106 149 IPR001841 -
Hepe04g1077 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 153 IPR013083 -
Hepe04g1077 172 SUPERFAMILY RING/U-box 82 154 - -
Hepe04g1077 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Hepe04g1077 172 SMART ring_2 107 148 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1077 Hepe-Chr4:65408928 Hepe05g0814 Hepe-Chr5:21213006 1.21e-28 dispersed
Hepe02g2894 Hepe-Chr2:78018265 Hepe04g1077 Hepe-Chr4:65408928 1.35e-18 transposed
Hepe05g1981 Hepe-Chr5:70278527 Hepe04g1077 Hepe-Chr4:65408928 1.49e-35 transposed
Hepe04g1077 Hepe-Chr4:65408928 Hepe05g0457 Hepe-Chr5:6040006 7.04e-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1077 - - - 0.0