Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1082 ATGAACAACGGCAGCGCTCGGAAAAGTCGACCGCCGCCGCCGCACCCATCGCCGGCTCCACCGGCCAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCACGACGAGAACGCCCTCATCCTCCGCGACATGGAGGAGCGTCAGGCCCTCGCTTCCCGTCTCGCCAAGTGGGTTCGTCCACCTCTTTCCCAGGAGTACCTCTCCCAGTCGAAGAGCATCGTGTTTCAGCAATTGGAGATTGATTATGTGATCGGGGAAAGTCACAGAGAATTGTTGCCGAATTTGTCTGGCCCAGCCGCTATTCTTAGAATTTTTGGGGTTACGAGAGAAGGACATAGTGTATGCTGCCATGTTCATGGATTTGAACCATACTTCTATATCAGCTGCCCTCCCGGAATGGGTCCCGACGACATCTCTCTTTTCCACCGAACTCTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAGCAAGTCACCTAATTTTGTGCGCCGTATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAACCATTTCTTAAAATTGTAGTTGCACTGCCAACAATGGTCTCCGGCTGCCGTGGTATTCTTGACAGAGGCATACAAATTGATGGCTTTGGTATGAAGAGCTTCATGACATATGAAAGCAATGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAGCCGTTAGAAATTTCTCATATTGCCAATTGGAGATTGATTGCCTATATTCAGACTTGATAAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCAAGGATCCCGTGATTCAGGTGGCAAACCTAGTAACTTTGCAGGGAGAGGACCAACCATTTATTCGCAATGTCATGACCCTTAACTCTTGCTCTCCTATTGCGGGTGCTGATGTCTTATCATTTGATACAGAGCGTGAAGTTTTGCTGGCTTGGAGGGATCTAATTCGTGAAGCAGACCCTGATATACTAATTGGATATAACATCTGCAAATTTGATTTGCCATATCTAATGGAGAGAGCCGAGGCACTGAAAATTGCAGAATTTCCATTATTGGGTCGTATCAGGAACAGCAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGTTATGCAACGAGATTATAAATTAAGTTCGTACTCGTTGAATTCTGTTTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTTCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTGCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAGGCAAAACAGAGAAACCTTGTTATTCCAAATGCTAAACAGGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAGAAGCCCATTGCTACGCTGGATTTTGCATCTCTGTATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGATGCTCGCAAGCTAAACCTGCCCCCTGAACACTTCAATAAAACCCCCTCTGGTGATATATTTGTGAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCTAAAGCAGATTTGAAGGAAGCGAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTACCGTGTTTAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACACACAAAGAAGCTCGTGGAAGATAAATTTACAACACTTGGGGGCTATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCCGTTATGGTACAATTTGGTGTGCCCAGTGTCGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATTAAACCCATCAAGTTAGAGTTTGAGAAGGTTTATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATATTGGACTAATCCAAATAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGGAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTTCCTGGGGCAGTTCAATTTGTGAAGAACACGATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTGGTTATCACTAAGGGACTGACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGCAAGCGTGATGCTGCCACTGCTCCAAATGTTGGCGATCGAGTTCCTTATGTGATCATTAAAGCTGCAAAAGGTGCCAAGGCATATGAGAAGTCAGAGGATCCCATTTATGTTCTAGAGAATAACATACCGATAGACCCTCAGTACTATCTCGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCTTGAAAAATGCTAGCAAGGAACTTCTACATGGAAGTCACACACGATCAATTTTTATTTCTACTCCTTCAAACAGTGGCATAATGAAATTTGCTAAGAAACAGCTTACCTGCATTGGCTGCAAGGCTCTACTAAGCAAGGCAGACAAAACTGTCTGCTCACACTGCAAAGGAAGAGAAGCGGAGCTTTACTGCAAAGCGGTAGCAAATGTGTCTGATTTGGAGACGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGAATCCCTTCACCAAGATGTCCTCTGTACGAGTCGAGACTGTCCAATATTTTATCGAAGGAAGAAGGCACAAAAAGACATGGCCGAAGCTAAACAACATTTGGAACGTTGGAATTACTGA 3261 43.15 MNNGSARKSRPPPPHPSPAPPAKHQALSQEEDFVDEDVFLDENLHDENALILRDMEERQALASRLAKWVRPPLSQEYLSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKSPNFVRRIELVQKRSIMYYQQQTSQPFLKIVVALPTMVSGCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKAVRNFSYCQLEIDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTKDPVIQVANLVTLQGEDQPFIRNVMTLNSCSPIAGADVLSFDTEREVLLAWRDLIREADPDILIGYNICKFDLPYLMERAEALKIAEFPLLGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQRNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGDIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQFVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSKADKTVCSHCKGREAELYCKAVANVSDLETVFGRLWTQCQECQESLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQHLERWNY 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 65450531 65476793 - Hsped.04g10820.1 Hepe04g1082 568220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1082 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Hepe04g1082 1086 CDD POLBc_delta 567 960 - -
Hepe04g1082 1086 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Hepe04g1082 1086 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
Hepe04g1082 1086 FunFam DNA polymerase 641 693 - -
Hepe04g1082 1086 Gene3D - 294 512 IPR036397 GO:0003676(InterPro)
Hepe04g1082 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Hepe04g1082 1086 Gene3D - 814 969 IPR042087 -
Hepe04g1082 1086 FunFam DNA polymerase 333 567 - -
Hepe04g1082 1086 Pfam DNA polymerase family B, exonuclease domain 229 462 IPR006133 -
Hepe04g1082 1086 NCBIfam DNA polymerase (pol2) 352 957 - -
Hepe04g1082 1086 Gene3D DNA Polymerase, chain B, domain 1 89 265 - -
Hepe04g1082 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 67 1062 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Hepe04g1082 1086 FunFam DNA polymerase 814 970 - -
Hepe04g1082 1086 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Hepe04g1082 1086 CDD DNA_polB_delta_exo 290 518 - -
Hepe04g1082 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Hepe04g1082 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Hepe04g1082 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Hepe04g1082 1086 Gene3D Helix hairpin bin 641 693 - -
Hepe04g1082 1086 SMART polmehr3 293 752 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Hepe04g1082 1086 FunFam DNA polymerase 90 265 - -
Hepe04g1082 1086 MobiDBLite consensus disorder prediction 1 30 - -
Hepe04g1082 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1082 K02327 - - csv:101219332 2065.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1082 Hepe-Chr4:65450531 Hepe08g2317 Hepe-Chr8:63026160 3.79e-88 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0483 . 59 785 Core DNA Replication Machinery Family AT4G14700 66.1 2.2e-275 945.3
Hepe06g0483 . 93 785 Core DNA Replication Machinery Family AT4G12620 69.9 1.9e-282 968.8
Hepe10g0715 . 2 361 Core DNA Replication Machinery Family AT2G37560 66.7 3.3e-143 505.0
Hepe01g0676 . 2 334 Core DNA Replication Machinery Family AT2G01120 65.3 5.8e-126 448.0
Hepe03g0562 . 3 535 Core DNA Replication Machinery Family AT4G29910 56.7 2.2e-168 589.3
Hepe01g0525 . 1 281 Core DNA Replication Machinery Family AT1G26840 66.0 4.0e-94 341.7
Hepe08g2041 . 5 803 Core DNA Replication Machinery Family AT1G79150 57.8 1.7e-241 832.8
Hepe02g0024 . 5 794 Core DNA Replication Machinery Family AT1G79150 57.5 5.9e-239 824.3
Hepe05g1030 . 1 939 Core DNA Replication Machinery Family AT1G44900 74.7 0.0e+00 1339.3
Hepe04g1984 . 1 575 Core DNA Replication Machinery Family AT5G46280 79.3 3.1e-263 904.4
Hepe02g0482 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.6 0.0e+00 1183.7
Hepe08g2481 . 1 737 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1099.3
Hepe07g2577 . 61 893 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1193.7
Hepe09g1860 . 62 894 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1171.4
Hepe04g2123 . 59 797 Core DNA Replication Machinery Family AT5G44635 60.4 1.2e-266 916.4
Hepe09g1857 . 18 543 Core DNA Replication Machinery Family AT5G44635 69.3 9.5e-200 694.1
Hepe09g1855 . 7 316 Core DNA Replication Machinery Family AT5G44635 71.9 5.9e-125 445.7
Hepe09g1861 . 3 270 Core DNA Replication Machinery Family AT5G44635 73.1 3.3e-112 403.3
Hepe03g1834 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1205.7
Hepe09g0663 . 40 509 Core DNA Replication Machinery Family AT2G29680 58.1 1.9e-155 546.2
Hepe09g0663 . 42 470 Core DNA Replication Machinery Family AT1G07270 58.0 4.3e-138 488.4
Hepe03g1305 . 252 844 Core DNA Replication Machinery Family AT3G25100 77.0 9.0e-258 886.3
Hepe05g0235 . 53 834 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.5
Hepe02g0733 . 16 636 Core DNA Replication Machinery Family AT2G14050 78.4 4.2e-285 977.2
Hepe08g0291 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.3 1.8e-116 416.4
Hepe01g1589 . 1 973 Core DNA Replication Machinery Family AT1G77320 51.0 2.7e-262 902.1
Hepe03g1610 . 1 192 Core DNA Replication Machinery Family AT1G80190 64.6 2.4e-69 258.8
Hepe07g0357 . 24 168 Core DNA Replication Machinery Family AT3G12530 73.8 1.8e-61 232.3
Hepe07g1096 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 8.8e-61 229.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 8.4e-69 256.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 8.4e-69 256.9
Hepe08g0190 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 2.8e-51 198.7
Hepe08g1181 . 1 1539 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1745.3
Hepe10g1540 . 2 622 Core DNA Replication Machinery Family AT1G67630 62.0 2.3e-219 758.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe06g0251 . 3 445 Core DNA Replication Machinery Family AT5G41880 64.7 5.5e-175 610.9
Hepe04g1082 . 1 1086 Core DNA Replication Machinery Family AT5G63960 79.7 0.0e+00 1779.6
Hepe05g0526 . 1 437 Core DNA Replication Machinery Family AT2G42120 74.7 7.5e-201 696.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe08g0235 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.0 0.0e+00 2963.3
Hepe08g0235 . 9 2202 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2926.7
Hepe07g2561 . 13 288 Core DNA Replication Machinery Family AT5G22110 76.4 1.9e-128 456.4
Hepe07g2560 . 9 218 Core DNA Replication Machinery Family AT5G22110 56.7 1.1e-59 228.0
Hepe08g0185 . 1 925 Core DNA Replication Machinery Family AT5G22010 61.9 1.4e-305 1045.8
Hepe06g1212 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.4 7.2e-172 600.1
Hepe04g0589 . 1 354 Core DNA Replication Machinery Family AT5G27740 84.7 8.8e-176 613.2
Hepe02g2236 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 5.8e-154 540.8
Hepe08g2687 . 24 618 Core DNA Replication Machinery Family AT2G06510 68.1 1.0e-251 866.3
Hepe06g0960 . 34 702 Core DNA Replication Machinery Family AT2G06510 51.4 2.2e-198 689.1
Hepe09g0275 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 7.5e-244 840.1
Hepe06g0960 . 10 816 Core DNA Replication Machinery Family AT5G45400 51.9 5.3e-227 784.6
Hepe09g0275 . 1 618 Core DNA Replication Machinery Family AT5G61000 64.6 5.4e-237 817.4
Hepe06g0960 . 5 828 Core DNA Replication Machinery Family AT4G19130 52.6 1.5e-228 789.6
Hepe01g2077 . 1 267 Core DNA Replication Machinery Family AT2G24490 50.7 1.3e-70 263.5
Hepe09g1773 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.2 4.8e-189 657.5
Hepe05g1820 . 1 1112 Core DNA Replication Machinery Family AT1G08840 53.1 8.9e-301 1030.0
Hepe05g1236 . 9 171 Core DNA Replication Machinery Family AT2G25100 69.9 5.6e-61 231.5
Hepe08g0926 . 1 794 Core DNA Replication Machinery Family AT1G08130 66.7 7.9e-294 1006.5
Hepe08g0926 . 194 794 Core DNA Replication Machinery Family AT1G49250 68.4 3.8e-241 831.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30