Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1109 ATGCCTGCTTGGTGGGTGAGAAAATTCAGTAAAAACAAGGACAACCATCCCACTACTTTTCTCAACTTCTCCAACTCTTCTTCCCCCAAAACCGTTCCTAACAAGAACTCCAGGGCCTTCGATGACCTCTCTGCTGTGATTTCTAGCAGGGATCTTGCTTCTTCTGGGCCTGCTGATGCTGGCGGCTCTTCTGGGTTTTCTGGCTTTGACTCTGATAGTGGCGATAAGAGCCTTCCTCTTCCTCTACCTACTACTTCCGCCCTTGGGATTGATCATGGAGTTGGGATTGGATCTGGGTCGGTTTCCGTTTCCAGTGTTAGCTCTTCTGGGTCCTCGGATGATCATCCATCTGCTCAAGAACAGCTTCAATTTGGAGCTTACAGAGGATTTGCTGATACCAGAATAGAGACAAGGCCAAGAAGTCCAGGTCCAGCATCAAGAGGACCAACCAGTCCTACATCGCCTCTCAACCCACGGTTCTGTGGCAGGAGTCTGGAGTCTCCTACAGGCAAACTAGACGATGGTAAAAGTCGATGTCATAAGCTGCCGCTTCCTCCAAGTACTCCCACCAGCCCTTCTTCCTTGACCAGCACGAGAGCTATCAATATCGGTGATAACACGCAATCTAAGTGGAAGAAAGGAAAGCTTCTAGGAAGAGGAACATTTGGGCATGTTTTCCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAAGTCAAGGTCATAAGTGATGACTCAACATCCAAAGAATGTCTCAAGCAATTGAACCAGGAGATAACTGTGCTTAGTCAGCTTTCACATCCAAACATTGTCCGGTACTACAGTAGTGAAATGGGTGACGAATCGCTCTCGGTCTATTTAGAATATGTCTCCGGAGGCTCAATTCACAAATTACTTCAGGATTATGGCGCCTTCAAAGAACCCGTTATAAGAAATTATACCCGAAAGATTCTTTCTGGGCTTGCTTACCTGCATGGGCTAAATACTGTGCATAGGGACATTAAAGGGGCAAATATATTAGTGGATCCAAATGGCCAGGTCAAGTTGGTTGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGGTGCTTTCTTTCAAAGGCAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACAAACGGTTACAGTCTTGCTGTCGATATTTGGAGCCTTGGGTGTACAGTTTTAGAAATGGCTACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTAGCTGCCATATTCAAAATTGGAAATAGCAAAGACATTCCTGAAATTCCAGACCATCTCTCCTATGATGCTAAAAATTTTGTGCAATTATGCTTGCAACGGGATCCATCCGCACGTCCTTCTGCTGCAGAACTACTGGATCACCCTTTTGTTCTAGATGCTGTAACACCAAGAGCATCTGATGTCAACTTATCCATGGATGCATTTCCCTTTAGCTTTGATGGAAGCCAAACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGTGATGGAGATTATGTGACAAACCCAACATTCCCTTTGAAAGCTCCAAGGAGTCCTAGGGGAAATGTAAGATTAATCACGTCCTTGCCTGTCTCTCCATCTTCGAGTCCATTACGGTCATATGGCCCCGCACACCAGAGTTGTTATCTTTCACCACCTCGCACATCTTACATGGGGTTGGGTCAGAGCAGTTACAATTTGAATGAATACGCATATAACACGAGACCAAACACATTGTTCACCCACGATTCTTCACGAGAGTCATCGCTATTGAAAGTGCAGACTCCTATTGGATCACCAAGAAGACCTCTTTGA 1842 45.22 MPAWWVRKFSKNKDNHPTTFLNFSNSSSPKTVPNKNSRAFDDLSAVISSRDLASSGPADAGGSSGFSGFDSDSGDKSLPLPLPTTSALGIDHGVGIGSGSVSVSSVSSSGSSDDHPSAQEQLQFGAYRGFADTRIETRPRSPGPASRGPTSPTSPLNPRFCGRSLESPTGKLDDGKSRCHKLPLPPSTPTSPSSLTSTRAINIGDNTQSKWKKGKLLGRGTFGHVFLGFNSVSGQMCAIKEVKVISDDSTSKECLKQLNQEITVLSQLSHPNIVRYYSSEMGDESLSVYLEYVSGGSIHKLLQDYGAFKEPVIRNYTRKILSGLAYLHGLNTVHRDIKGANILVDPNGQVKLVDFGMAKHITNCTSVLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSKDIPEIPDHLSYDAKNFVQLCLQRDPSARPSAAELLDHPFVLDAVTPRASDVNLSMDAFPFSFDGSQTPPLLDRHPNRKSISICDGDYVTNPTFPLKAPRSPRGNVRLITSLPVSPSSSPLRSYGPAHQSCYLSPPRTSYMGLGQSSYNLNEYAYNTRPNTLFTHDSSRESSLLKVQTPIGSPRRPL 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 65970456 65975465 - Hsped.04g11090.1 Hepe04g1109 568247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1109 613 SUPERFAMILY Protein kinase-like (PK-like) 209 556 IPR011009 -
Hepe04g1109 613 MobiDBLite consensus disorder prediction 15 37 - -
Hepe04g1109 613 MobiDBLite consensus disorder prediction 135 204 - -
Hepe04g1109 613 MobiDBLite consensus disorder prediction 590 604 - -
Hepe04g1109 613 MobiDBLite consensus disorder prediction 51 84 - -
Hepe04g1109 613 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 76 473 IPR050538 -
Hepe04g1109 613 Gene3D Transferase(Phosphotransferase) domain 1 207 484 - -
Hepe04g1109 613 ProSiteProfiles Protein kinase domain profile. 211 467 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1109 613 FunFam Mitogen-activated protein kinase kinase kinase 209 491 - -
Hepe04g1109 613 MobiDBLite consensus disorder prediction 590 613 - -
Hepe04g1109 613 Pfam Protein kinase domain 212 467 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1109 613 CDD STKc_MEKK1_plant 210 467 - -
Hepe04g1109 613 ProSitePatterns Protein kinases ATP-binding region signature. 217 240 IPR017441 GO:0005524(InterPro)
Hepe04g1109 613 SMART serkin_6 211 467 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1109 613 MobiDBLite consensus disorder prediction 13 37 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0174 Hepe-Chr3:2182525 Hepe04g1109 Hepe-Chr4:65970456 3.37e-85 dispersed
Hepe04g1109 Hepe-Chr4:65970456 Hepe07g0143 Hepe-Chr7:1310318 1.74e-138 dispersed
Hepe04g1109 Hepe-Chr4:65970456 Hepe06g0686 Hepe-Chr6:50954140 1.54e-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72735 PF00069 Pkinase 5.50E-72 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1109 K04421 - csv:101203907 923.694