Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1115 ATGGAGTTGAAGGTGGAGAATCCCATTTGGAAAAAAGCTCCCATTGTCGGCGAAAAGTTCGTCGGAGAAACTTGCAGAAGTAGCAGAGTATATGCAGAGGCTGCCGGAGAAGATACAGAAAGTTCGAGTAATGTCGGTTGTGGCGTTGGAAATTATGGAGTTTGCGATCAATCGAGGTCGTTTCAAACGGTGGAGATGCACGGTGTTCCGTTCTCCGACAAGACGAAGGAAAGGCTTGTTTGGTTGAGGTCTCAAATTATAGGCGAAGATGCAGAATTTGATTCTCCATTTGGAGAAAGAAGAGTGAGTTATGCTGATCATACAGCTTCTGGTCGTTCTCTTCGTTATATTGAAGATTTCATCATCAGAAACGTTCTTCCATTTTATGGCAACACGCACACGTGCGATAGCTACGTAGGCCACCATACGACAAAGACGGTGAACGACGCGACCACGTACATCAAGAGGTGCTTAGGAGGTGGAGAAGAAGAAGCGCTTCTATTCTGTGGACAAGGCACGACATCCGCCATTAAAAGACTGCAAGAGGTGATGGGCATTGCAGTGCCATCCATTCTAAGAGAGAGAGTAATAGAGACCCTTAAGAAAGAAGAAAGATGGGTTGTTTTTGTTGGACCTTATGAGCATCATTCCAACCTCCTTTCATGGCGGCAGAGCTTGGCCGAAGTGGTAGAGATTGGAATGGATGAGAATGGACTTTTAGACATTGAAATGCTGAAATCCCAACTTGAAGCATATAAGAAAGCTGGAAATTATAGGCCAATTTTGGGTTCTTTCTCAGCTTGTAGTAATGTTACAGGAATTTATTCAGATACAAGGGCTATTGCTACACTTGTTCATCAATATGGAGGCCATGTTTGCTTTGATTTTGCTGCAAGTGGTCCTTATGTGCAAATTGATATGCGATCAGGGGAAATCGACGGCTACGATGCGATTTTCCTAAGTACACATAAGTTCCTTGGAGGGCCTGGATCACCTGGAATCCTTCTGATGAACAAAAGTCTTTATAAGCTGAAATCTTCTCCTCCGTCAACTTGTGGGGGTGGCACTGTGGACTATGTCAATGGCTTCAGGGAAAAGGACACATTGTACTATGAAGATATAGAAGAGAGGGAAAATGGTGGAACACCACAGATTATAGGAATAATAAGAGCAGCTTTGGCTTTTTGGGTAAAAGAATACATCAGCTACCAAGAGATAGAGAAGCAAGAGCATGAGTACGTAGAAAGGGCTTTGAAGAGACTTCTCCCAAATAGAAACATCTGCATTTTAGGGAACACGTCTTCTAAGCGACAAGCCATATTATCTTTTATCGTTTACTCTTCGACGAATTTGTCGCTCAACTGTATCACAGATAGATTATGTAAACCTAACAGCAGAGAAAAGGTTGAGAAGCTTTACATGTGGGGAGAGACGGGGTGTAAGAGAGGAAAACCTCTTCATGGTCCTTTTGTTGCAGCGCTCCTGAACGACCTGTTCGGCATCCAGGCTCGTGGAGGATGCAGTTGTGCCGGTCCCTATGGTCATAGGCTGCTCAGCATTGATGAAACATGCTCGCATGCCTACAGATCTGCCATTGCTAAGGGCTATGCTGGAGTAAAGCCTGGATGGACAAGAGTAAGCTTTCCATACTACATGTCAAATGAGGAGTTTGAGTTCATTTTAAAAGCTTTAGAATTCATAGCTGATTATGGACAAAGATTCCTTCCTTTGTATGCCTTCAATTTGAGAACTGGTAGCTGGACACTGAAGAAAAAGGAGCTCGCCGACCTACTTGGGAAGGAGAATTACAGTAATGGTCACATCTTAGCATTGGAAAACCAGTGTGCCAATGCAGAAGCTAAGTTAGCAGCCATAGTACGCAAGCATAAATCATATTTAGAATCTGCCAAAAAAATTGCCAATCTCCTCCCCAAGTTCCCTCCTGAGAGAAAGCTTCACGAGGACATTGAATCCTCTATATTATACTTCAGAATCTAG 1998 43.49 MELKVENPIWKKAPIVGEKFVGETCRSSRVYAEAAGEDTESSSNVGCGVGNYGVCDQSRSFQTVEMHGVPFSDKTKERLVWLRSQIIGEDAEFDSPFGERRVSYADHTASGRSLRYIEDFIIRNVLPFYGNTHTCDSYVGHHTTKTVNDATTYIKRCLGGGEEEALLFCGQGTTSAIKRLQEVMGIAVPSILRERVIETLKKEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGMDENGLLDIEMLKSQLEAYKKAGNYRPILGSFSACSNVTGIYSDTRAIATLVHQYGGHVCFDFAASGPYVQIDMRSGEIDGYDAIFLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGTVDYVNGFREKDTLYYEDIEERENGGTPQIIGIIRAALAFWVKEYISYQEIEKQEHEYVERALKRLLPNRNICILGNTSSKRQAILSFIVYSSTNLSLNCITDRLCKPNSREKVEKLYMWGETGCKRGKPLHGPFVAALLNDLFGIQARGGCSCAGPYGHRLLSIDETCSHAYRSAIAKGYAGVKPGWTRVSFPYYMSNEEFEFILKALEFIADYGQRFLPLYAFNLRTGSWTLKKKELADLLGKENYSNGHILALENQCANAEAKLAAIVRKHKSYLESAKKIANLLPKFPPERKLHEDIESSILYFRI 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66065518 66068607 - Hsped.04g11150.1 Hepe04g1115 568253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1115 665 PANTHER CYSTEINE DESULFURASE 73 578 - -
Hepe04g1115 665 SUPERFAMILY PLP-dependent transferases 96 565 IPR015424 -
Hepe04g1115 665 Pfam Aminotransferase class-V 123 445 IPR000192 -
Hepe04g1115 665 Gene3D - 121 356 IPR015421 -
Hepe04g1115 665 Coils Coil 608 628 - -
Hepe04g1115 665 Gene3D Aspartate Aminotransferase, domain 1 388 571 IPR015422 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1115 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1289 . . . Bda10g00393 . . . Bma15g00795 . . . Cma07g00799 . Car07g00786 Sed14g0225 . . Bhi03g01355 Tan03g1312 Cmetu08g1351 . Hepe04g1115 . . . . . . . . . . . . . . . . . . . . . Bpe10g00255 . . . . . Cmo07g00821 . . . . . . . . . . . . . . . . . . . . . . Chy02g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005411 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 3 40