Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1117 ATGAAGGGTGGAACGCTTCAGATCAACTGGCACGACTCAAAGCCAGTGCTCTCCCTAGACTTCCATCCACTTTCATGTCTCCTCGCGACTGGCGGAGCCGATTTCGATATCAAGCTTTGGTTGTTAAATTCAGGGGAAGAACAGAAGAAAGTCCCCGGTGCTACCTATCAAAACAGCCTTTCTTATCATGGTTCTGCTGTTAATAGCCTTCGCTTCTCACCTTCTGGAGAACTGCTTGCCTCTGGTGCTGATGGAGGTGAGCTGATCATATGGAAATTGCACCATTTGGAAAGTGGCCAGACTTGGAAGGTCCTGAAGACACTATCATTTCACCGCAAGGATGTGCTCGACCTGCAGTGGTCTCATGATGGTGCATATTTGATATCTGGATCCGTAGATAATTCTTGCATCATATGGGATGTAAGCAAAGGTTCTGTCCATCAGATTTTAGATGCCCATTTGCACTATGTTCAAGGTGTGGCGTTGGACCCACTGGGAAAATATGCCGCTTCTCTGAGTTCAGACAGAACTTGCAGAATCTATGCCTATAAATCAACCAAAGTAAAAAGCAGTGAGAAAATGAATTATGTTTGTCAGCATGTCATTACTAAGGCAGAACATGTTTCTGTTGATGATTCTAAGTCTGCCAGAAACCATCTCTTTCATGATGAGACGTTGCCATCTTTCTTCCGAAGGTTGGCCTGGTCACCTGATGGATCATTTCTACTTGTGCCTGCAGGTATTTGTAAAATATCGCCAGCATCTGAACCAGTTAATACAGCCTATATATTTTCCAGAAAGGATCTTTCGAGGCCTGCAATTCAGCTCCCTGGTGCCAGCAAGCCGATTGTAGCAGTTTGCTTTTGTCCAAAGCTTTTCAGTCTTAGAGGATTAAATTCAGCTGGGTTCTTTAAGCTTCCCCATCGGGTCATTTTTGCAGTAGTGACTTTAAATTCTTTGTACATATATGACACTGAAAGTGTTGTGCCACTAGCAATCATGGCTGGCCTTCACTATGCTGCCATAACTGATGTCGCCTGGTCGGCAGATGCTCATTATTTAGCACTATCTTCTCAAGATGGTTACTGCACTTTGGTGGAATTTGAAAATGATGAACTGGGATCACCAATCGCTCTATCAGAAGATAGAATATGCACGACGACCAATCAGAATACAAGTTCAACAGATGTAGTGACTATAAACGATGATGAAAAAAAGAAAACCGAAATGGAGATCGAAAAGCCAGATAAGATGGTGATTGAAAAAGCTTCTAGGCGAGAAAATGTTGTCGTATCTGACAGCAAAGGACATGAAATGGAAAAGAAGGCAAGTAAACAGGTATCTATAAGCTCTTCGAACAACTCTGCTAGCAGCAAACCAGCCAAAAGGCGCATTACACCCATGGCTATTGATCCATGA 1419 43.27 MKGGTLQINWHDSKPVLSLDFHPLSCLLATGGADFDIKLWLLNSGEEQKKVPGATYQNSLSYHGSAVNSLRFSPSGELLASGADGGELIIWKLHHLESGQTWKVLKTLSFHRKDVLDLQWSHDGAYLISGSVDNSCIIWDVSKGSVHQILDAHLHYVQGVALDPLGKYAASLSSDRTCRIYAYKSTKVKSSEKMNYVCQHVITKAEHVSVDDSKSARNHLFHDETLPSFFRRLAWSPDGSFLLVPAGICKISPASEPVNTAYIFSRKDLSRPAIQLPGASKPIVAVCFCPKLFSLRGLNSAGFFKLPHRVIFAVVTLNSLYIYDTESVVPLAIMAGLHYAAITDVAWSADAHYLALSSQDGYCTLVEFENDELGSPIALSEDRICTTTNQNTSSTDVVTINDDEKKKTEMEIEKPDKMVIEKASRRENVVVSDSKGHEMEKKASKQVSISSSNNSASSKPAKRRITPMAIDP 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66081787 66087688 - Hsped.04g11170.1 Hepe04g1117 568255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1117 472 MobiDBLite consensus disorder prediction 445 461 - -
Hepe04g1117 472 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Hepe04g1117 472 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Hepe04g1117 472 MobiDBLite consensus disorder prediction 427 472 - -
Hepe04g1117 472 Gene3D - 4 222 IPR015943 GO:0005515(InterPro)
Hepe04g1117 472 Gene3D - 227 439 IPR015943 GO:0005515(InterPro)
Hepe04g1117 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 93 - -
Hepe04g1117 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 145 - -
Hepe04g1117 472 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 456 IPR045145 GO:0005634(PANTHER)|GO:0006334(PANTHER)|GO:0006335(InterPro)|GO:0033186(PANTHER)
Hepe04g1117 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 SUPERFAMILY WD40 repeat-like 8 365 IPR036322 GO:0005515(InterPro)
Hepe04g1117 472 SMART WD40_4 143 182 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 SMART WD40_4 3 41 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 SMART WD40_4 53 92 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 SMART WD40_4 101 140 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 SMART WD40_4 327 367 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 MobiDBLite consensus disorder prediction 427 444 - -
Hepe04g1117 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 Pfam WD domain, G-beta repeat 147 181 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 Pfam WD domain, G-beta repeat 9 40 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 Pfam WD domain, G-beta repeat 58 91 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 Pfam WD domain, G-beta repeat 338 363 IPR001680 GO:0005515(InterPro)
Hepe04g1117 472 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1117 K10751 - - csv:101222502 809.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1283 . . . . . . . . . . Cma03g01090 . Car03g00981 . Sed10g0499 . Cpe10g00342 Bhi03g01357 Tan03g1314 Cmetu08g0769 . Hepe04g1117 . . Cla01g01520 . . . . . . . . Cone6ag1289 . Lsi01g01145 . . Cme08g01079 . Blo06g00198 . . . . . . . Cmo03g01076 . . . . . . . . . . . . . . . . . . . . . . Csa06g02786 Chy02g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011096 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31