Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1118 ATGGAGCCCCATCATCTCCCAAACTCCTCTTCTCATTTCCAACATTATTCCCCTATGGAAGACCACCACATCCTTCACCACCACCACCACGACCTCGACTCTATTTGGTCGTCGTCGTTGTTGCCTTTTCAATCCCCCGATAATCCTCATCACCAATTCCCCACCTCCACCTCCTCCACCCACCTCCTGATAGGCTACGCTACTCCGAGTCCTGGCCGGGTGGGTGATGATAATCAAGAAGAGCCGGAAGAAGAGCTAGGCGCCATGAAGGAGATGATGTACAAGATTGCCGCGATGCAGCCGGTCGACATCGACCCTTCAACCATTCGGAAGCCGAAGAGGCGAAACGTACGAATTAGCGACGATCCACAAAGCATTGCCGCCCGTCTCCGACGAGAGAAGATCAGCGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCCGGAGGGACGAAGATGGACACAGCTTCAATGCTAGATGAAGCCATTCACTATGTTAAGTTCTTGAAGAGACAAATCCGGTTGCTGCAGTCAAGTCAGCCGCAACAGCCGAGTACTGCCGGTGGCGCCGCCGGAGGATGGCCATTTACATTCCATAAGGCTAATAATAACGGCGGTTCAACCTCCTCATCCACTTCCATGGAGGCTACTCCTGCCATTACACCATCAGGATGGTGA 675 52.59 MEPHHLPNSSSHFQHYSPMEDHHILHHHHHDLDSIWSSSLLPFQSPDNPHHQFPTSTSSTHLLIGYATPSPGRVGDDNQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRREKISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKRQIRLLQSSQPQQPSTAGGAAGGWPFTFHKANNNGGSTSSSTSMEATPAITPSGW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66094109 66094889 - Hsped.04g11180.1 Hepe04g1118 568256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1118 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 204 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1118 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983(InterPro)
Hepe04g1118 224 MobiDBLite consensus disorder prediction 178 224 - -
Hepe04g1118 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 179 IPR036638 GO:0046983(InterPro)
Hepe04g1118 224 Gene3D - 122 186 IPR036638 GO:0046983(InterPro)
Hepe04g1118 224 CDD bHLH_AtIND_like 120 181 - -
Hepe04g1118 224 SMART finulus 125 174 IPR011598 GO:0046983(InterPro)
Hepe04g1118 224 MobiDBLite consensus disorder prediction 199 224 - -
Hepe04g1118 224 FunFam BHLH transcription factor 122 186 - -
Hepe04g1118 224 Pfam Helix-loop-helix DNA-binding domain 128 169 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0196 Hepe-Chr2:2003816 Hepe04g1118 Hepe-Chr4:66094109 2.44e-09 dispersed
Hepe03g1487 Hepe-Chr3:71700449 Hepe04g1118 Hepe-Chr4:66094109 8.69e-34 dispersed
Hepe04g1118 Hepe-Chr4:66094109 Hepe08g1329 Hepe-Chr8:15158851 6.44e-18 dispersed
Hepe04g1118 Hepe-Chr4:66094109 Hepe08g1290 Hepe-Chr8:14350005 2.56e-40 transposed
Hepe04g1118 Hepe-Chr4:66094109 Hepe01g1772 Hepe-Chr1:82828504 4.60e-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55402 PF00010 HLH 2.10E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1118 - - - 0.0