Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1121 ATGGCAATTCCCACTTCTCTACTTCCCTGTTTGTCTTTCGACACCATCTCCACCTCTGCTTTTTATTCTTCTTCCTCCTCCTTTTCGTTGCAATCTATTTGTCCCTTTAAGCCCCATTGCCATGGTTTGAAGCTGGATAACAATCCCACCTCAAATGGGTCGCTCGTTGTTCACTGCTCCGCTCGTGAAATGGGTTCCAACTCTGACCCTTTTAATGGCAGCATGAAGCATCAGATATCATCTATGGCTCCTGGTGGGATGACACTAAATGAAGCTTCCATGTCCATGCCATCGGTTAAATGGCGAAGAGTATTGCTTAAAGTAAGCGGCGAAGCACTTGCTGGGGATGGATTGCAGAATATTGATCCAAAGGTAACCATGGCAATTGCGAGGGAGGTTGCAGCTGTAACCCGTCTGGGCATTGAGGTTGCTATAGTCGTTGGTGGGGGAAACATTTTCCGTGGAGCCTCCTGGGCTGGATGTAGTGGTTTGGATCGTTCATCTGCTGATTACATTGGGATGATGGCAACAGTCATGAATGCTATATTTCTTCAAGCCACAATGGAGAGTATAGGCATTCCTACACGAGTGCAGACTGCATTTCGAATGTCGGAGGTGGCAGAGCCATATATTCGACGTAGGGCTGTGAGGCACTTGGAAAAAGGAAGAGTTGTGATCTTTGCAGCTGGTACAGGCAATCCGTTTTTCACTACAGATACTGCAGCAGCCCTCCGTTGCGCGGAAATTAATGCTGAAGTTCTGCTGAAAGCGACAAACGTTGACGGGGTTTATGAGGATGATCCTAGACGAAACCCGAATGCACGTCTGCTCGAGAATCTTACGTACCAGGAGGTGACTTCGAAGGACCTTTCGGTGATGGACATGACTGCCATTACTCTATGCCAGGAGAATAACATTCCTGTTGTCGTCTTCAATCTAACAAAGCCGGACAACATCACGAAAGCCATAAAGGGCGAGAGAGTCGGGACATTGATCGGAGGAACACGGAACTCAATGGTAGCAACTCAGTCTTTTTGCTCTCTCCATCCGCCATTCAGAATGACGAAGTTCAGGAAGCTAGGTCGACCCATAGGTCACCGGATGGCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGCATTGAGACTACTATTACAAAGGCTAAAGAAATCCGACGGCTTGCTGACAACATGGTTCAATTTGGAAAAGAGGAAAGGAGTATATATCAATTACCACTGAGGTATGCTCGTGTTGGCAATGGATGA 1275 47.29 MAIPTSLLPCLSFDTISTSAFYSSSSSFSLQSICPFKPHCHGLKLDNNPTSNGSLVVHCSAREMGSNSDPFNGSMKHQISSMAPGGMTLNEASMSMPSVKWRRVLLKVSGEALAGDGLQNIDPKVTMAIAREVAAVTRLGIEVAIVVGGGNIFRGASWAGCSGLDRSSADYIGMMATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVLLKATNVDGVYEDDPRRNPNARLLENLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLTKPDNITKAIKGERVGTLIGGTRNSMVATQSFCSLHPPFRMTKFRKLGRPIGHRMAMLRTMVSQLVKHERIETTITKAKEIRRLADNMVQFGKEERSIYQLPLRYARVGNG 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66127871 66134503 - Hsped.04g11210.1 Hepe04g1121 568259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1121 424 Pfam Amino acid kinase family 103 312 IPR001048 -
Hepe04g1121 424 NCBIfam UMP kinase 102 332 IPR015963 GO:0005737(InterPro)|GO:0006221(InterPro)|GO:0033862(InterPro)
Hepe04g1121 424 SUPERFAMILY Carbamate kinase-like 100 332 IPR036393 -
Hepe04g1121 424 Hamap Uridylate kinase [pyrH]. 99 333 IPR015963 GO:0005737(InterPro)|GO:0006221(InterPro)|GO:0033862(InterPro)
Hepe04g1121 424 Gene3D - 93 341 IPR036393 -
Hepe04g1121 424 CDD AAK_UMPK-PyrH-Ec 102 333 IPR015963 GO:0005737(InterPro)|GO:0006221(InterPro)|GO:0033862(InterPro)
Hepe04g1121 424 Gene3D Ribosomal protein L17 352 420 IPR036373 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hepe04g1121 424 SUPERFAMILY Prokaryotic ribosomal protein L17 356 409 IPR036373 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hepe04g1121 424 FunFam Uridylate kinase 93 336 - -
Hepe04g1121 424 Pfam Ribosomal protein L17 370 408 IPR000456 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hepe04g1121 424 PANTHER URIDYLATE KINASE 55 335 - GO:0006225(PANTHER)|GO:0033862(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1121 K09903 - - csv:101221565 575.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1121 Hepe-Chr4:66127871 Hepe05g0328 Hepe-Chr5:4045539 1.49e-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1268 . . . . . Bpe13g00023 . . . . . Cma07g00792 Car03g00976 Car07g00778 Sed10g0495 Cpe19g00537 Cpe10g00345 Bhi03g01373 Tan03g1322 Cmetu08g1743 . Hepe04g1121 . . Cla01g01525 Cam01g1595 Cec04g1239 Cco04g1309 Clacu01g1619 Cmu01g1505 Cre04g1184 . . Cone6ag1292 . Lsi01g01139 . . Cme08g01074 . . Bda11g01366 . . . . Bma06g00506 . . Cmo07g00815 . . . . . . . . . . . . . . . . . . . . . Csa06g02792 Chy02g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007541 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 36