Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1122 ATGCTGAGCTCTGATGGAGACACAGATGTTTTCTTCGACTCGGAAGATTGCTTGCCATCAGAGGAGTCCTTTGTAGCAGAGGAAGTGGATTTCAGCAAGTTGGGATATGATATATGGATGAGTGAGCCTCAGAGCATTAAGAAGAGAAGAGAGCGTTTTCTTCAAGAAGTTGGTTTTGTTGAATTTGCATCCCCAAGGACTTGTGCACAGGATTCAGAGATTGAATCTAGTGGTGATTCATCAGGGAGGATGGAATTGGAGAGACTTACAGAGTGCAGTGGAGCTGTCTCAAGCTCTGGCTATGCACCTAGCTGTAATGTGGAGGACAATGATTTAGAAGTATGCCATAATGAGATGCAAAGTGCTGAATTCGACGACGAGGCAACCAGTCGATCATTTTCTGTTTCCGACTCCAGCTTTCAACGGTGCCAAGGTGAAGCTAACATTGAAGGTTGTAAGGATATTGATGTGGGTAAAAAGAAAATGAAGAGTTGGTGGAAATCCTTTAAGAACAAGGCGGCGAGACGAACGAGTACAGAGTTGTCTGAGGAATCGAAATCGAATCCAGCAAAATCCAAAAGTTGCAGGACGAAGGTGTACCAAAACAAAAAGAGGTGCTCAGAATTTAGTGCATTATATATGAGACAACAGATTTGTGCACACAAGGGCTTGATTTGGACAATGAAATTTAGTCCAGATGGGAAGTATGTGGCGAGCGGAGGCGAAGATGGAGTTGTACGCATTTGGCGTGTAACGTCTGCGAATGCCTCTGGAGAGTTTTTAGCAAACGACAGAAATTATAACAACAAACCAAGAGAAGGGAAGTCTAGTTTCAGCAGCAAACCGTCAAGATTTGCCACTGTTGTCATTCCTGAAAAGGTTTTTCAGATTGACGAGTCGCCAGTGCAAGAGTTCCATGGACATTCCAGTGATGTCTTGGACATAGCTTGGTCCAATTCAAACTGTCTTCTTTCCGCCTCCAAGGATAAAACCGTGCGCTTGTGGCAAGTTGGTTCTGATCAATGTCTCAATGTTTTCCACCATAAAAACTATGTGACTTGTATCCAATTCAATCCAATGGATGAAAACCACTTCATCAGTGGCTCAATTGAGGGCAAGATCCGAATTTGGAGTGTGTCGAAGCAGCGGGTAGTTGATTGGGCTGATGTCCGAGATGTAATTACCGCTTTATCTTATCGACCGGACGGGAAGGGGTTTGTTGTTGGTTCTATTACCGGCACTTGTCGTTTCTACGAAACATCAGGTGATTATCTTCATCTGGATGCAGAGATCAATGTTCAAGGTAGAAAAAAAGCCTCGGGCAAAAGGATCACTGGCATTCAGTTTTGCCGGGATAACTCTGAAAGAGTGATGATAACTTCGGAAGACTCTAAAGTACGCATATTTGAAGGGACCGAAATCATCAACAAATTCAAAGGTCTATCGAAGTCGGGGAGTCAGATGTCTGCTTCCTTTACGAAAAATGGGAAGCATATAGTATCAGTCGGAGAGGACTCTCGTGTATATATGTGGAACTACGATAGTCTTCGCCTCCCGTCTACGAAAGAAACGAAATCTCAGCAGTCTTCTGAGCATTTCTTTTCTGATGGTGTGTCGGTTGCTATACCATGGCCTGGCATTGGAACCGAACCGAGGTGCTTCGGCGACAACCAAGCGAAGTTTTCACAGAGACAGGATTACCAAGGGGCTGCTTCTTGGACAAGAGATTCGGAGCGTTTTTCCCTCGGTAATTGGTTCTCTGTTGAGGGTCTGTGCCGGGGATCTGCAACATGGCCAGAAGAGAGACTACCTCTCTGGGATTTACCAGTTGCAGATGATGAACATGACAACCTACAACACCTAGATCATAATCAAAAGAAACTAAATGGTCAGAGCGACGCCCACGACCACGTATCGCCTCCAGAACCATGGGGCCTTGTTATCGTCGTGGCTGGATTAGATGGAACTATTAAGACATTCCACAACTATGGATTGCCCATCAGTCTTTAG 2010 44.83 MLSSDGDTDVFFDSEDCLPSEESFVAEEVDFSKLGYDIWMSEPQSIKKRRERFLQEVGFVEFASPRTCAQDSEIESSGDSSGRMELERLTECSGAVSSSGYAPSCNVEDNDLEVCHNEMQSAEFDDEATSRSFSVSDSSFQRCQGEANIEGCKDIDVGKKKMKSWWKSFKNKAARRTSTELSEESKSNPAKSKSCRTKVYQNKKRCSEFSALYMRQQICAHKGLIWTMKFSPDGKYVASGGEDGVVRIWRVTSANASGEFLANDRNYNNKPREGKSSFSSKPSRFATVVIPEKVFQIDESPVQEFHGHSSDVLDIAWSNSNCLLSASKDKTVRLWQVGSDQCLNVFHHKNYVTCIQFNPMDENHFISGSIEGKIRIWSVSKQRVVDWADVRDVITALSYRPDGKGFVVGSITGTCRFYETSGDYLHLDAEINVQGRKKASGKRITGIQFCRDNSERVMITSEDSKVRIFEGTEIINKFKGLSKSGSQMSASFTKNGKHIVSVGEDSRVYMWNYDSLRLPSTKETKSQQSSEHFFSDGVSVAIPWPGIGTEPRCFGDNQAKFSQRQDYQGAASWTRDSERFSLGNWFSVEGLCRGSATWPEERLPLWDLPVADDEHDNLQHLDHNQKKLNGQSDAHDHVSPPEPWGLVIVVAGLDGTIKTFHNYGLPISL 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66138952 66144327 - Hsped.04g11220.1 Hepe04g1122 568260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1122 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 521 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 SMART WD40_4 380 419 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 SMART WD40_4 211 250 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 SMART WD40_4 471 512 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 SMART WD40_4 298 336 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 SMART WD40_4 430 470 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 SMART WD40_4 339 378 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Hepe04g1122 669 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Hepe04g1122 669 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Hepe04g1122 669 Gene3D - 203 538 IPR015943 GO:0005515(InterPro)
Hepe04g1122 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 345 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 MobiDBLite consensus disorder prediction 177 191 - -
Hepe04g1122 669 MobiDBLite consensus disorder prediction 177 196 - -
Hepe04g1122 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 253 - -
Hepe04g1122 669 FunFam WD repeat-containing protein 44 202 544 - -
Hepe04g1122 669 Pfam WD domain, G-beta repeat 341 378 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 Pfam WD domain, G-beta repeat 488 512 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 Pfam WD domain, G-beta repeat 218 249 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 Pfam WD domain, G-beta repeat 300 335 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 380 - -
Hepe04g1122 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 387 IPR001680 GO:0005515(InterPro)
Hepe04g1122 669 PANTHER WD REPEAT DOMAIN 44 9 668 IPR040324 -
Hepe04g1122 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 337 - -
Hepe04g1122 669 SUPERFAMILY WD40 repeat-like 213 515 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1122 K20241 - - csv:101207772 1124.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1122 Hepe-Chr4:66138952 Hepe06g0808 Hepe-Chr6:54866251 8.30e-116 dispersed
Hepe04g0857 Hepe-Chr4:62839690 Hepe04g1122 Hepe-Chr4:66138952 9.53e-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49