Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g1125 | ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGGTGTCCGATCTCGCTAGACGTGATGAAATCCCCTGTAAGTTTGTGTACCGGAGTTACTTACGATCGTTCCAGCATCCAGAAATGGCTTGACAATGGAAACAATACTTGTCCGGCCACCATGCAGGTTCTTCACTCCAAAGAGTTCGTTCCAAACAACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCTTCGTCGCCGAGTTCACTCGCCCGATTCCTCCCCTGTTCTCTCCTCCGATCAAATTCTCCGCCTTATCAAGCGCGTGGAGATCGATCAATCTCGCGCCGATTCGCTCACGCGGCTGGTCTCTTTCGCCGCTGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATCGACGGTCTCGTTCCGGTTCTTGTCGATCTTCTTGGCAATGTCGATGGCGATTTGGTTGAGCAGACGGTGAGGCTGTTGCATTTGATTCGGAGTGAAATTGATGATAAGGAGCGGTTTGCAAAGTCGATGTTGAAAGGCGATCGAAATCGTATTTCGTCTCTGCTTCTTGTTCTACGGAAAGGAACCGTCGAATTGAAAATATGTTCGGCGAATCTGTTAGAGCATCTCGCAATCGACGCCGAGGCGAAGATTAGGATCGCGGAAACGGAAGGATTGATGGAAGAATTACTGAAATTAATCAACTCAGAAAGCGATCCAGCCCTAATCGAATCAATCCTGTCGTGCCTAATTTCAATTTCAATGCCGAAACGGATCAAACTCAAATTAGTCCATCTCGGAGCGATAAGATCGGTAACAAAGCTTCTGACGGAGGCGAACATTTCGATAACGGAGAAGATTCTGAAAGTGCTGGAAACGGCGTCGACGGTGAGGGAAGGGAGGACGGAGATCGGAGAGGACGCAGGGTGCGTGGCGGCGATAGTACAGAAAGTGCTGAAGGTGTCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGTGTTTGTTATCTGTTCAGAGACGAGAAAGCGGCGGAGGCGCTGACGAAGGCGAATGGATTGACGAAGATATTGCTGTTAATGCAGAGCAATTGCTCGGCGTCGGTCCGGCAGATGGCGAGAGATTTGCTGAGGATATTTCGGATCAATTCGAAATCGTGCTTATCGAGTTATGATACTAAAACTACGCATATCATGCCCTGTTAG | 1212 | 49.5 | MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLHSKEFVPNNNLHRLIQIWSDSLRRRVHSPDSSPVLSSDQILRLIKRVEIDQSRADSLTRLVSFAAESVENRRLLCGIDGLVPVLVDLLGNVDGDLVEQTVRLLHLIRSEIDDKERFAKSMLKGDRNRISSLLLVLRKGTVELKICSANLLEHLAIDAEAKIRIAETEGLMEELLKLINSESDPALIESILSCLISISMPKRIKLKLVHLGAIRSVTKLLTEANISITEKILKVLETASTVREGRTEIGEDAGCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSASVRQMARDLLRIFRINSKSCLSSYDTKTTHIMPC | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 66242902 | 66244454 | - | Hsped.04g11250.1 | Hepe04g1125 | 568263 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g1125 | 403 | SUPERFAMILY | ARM repeat | 109 | 387 | IPR016024 | - | |
Hepe04g1125 | 403 | SUPERFAMILY | RING/U-box | 6 | 78 | - | - | |
Hepe04g1125 | 403 | Gene3D | - | 94 | 396 | IPR011989 | - | |
Hepe04g1125 | 403 | ProSiteProfiles | U-box domain profile. | 9 | 83 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Hepe04g1125 | 403 | SMART | Ubox_2 | 13 | 76 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Hepe04g1125 | 403 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 86 | IPR013083 | - | |
Hepe04g1125 | 403 | PANTHER | WDSAM1 PROTEIN | 7 | 402 | IPR045185 | GO:0061630(InterPro) | |
Hepe04g1125 | 403 | CDD | RING-Ubox_PUB | 11 | 63 | IPR045210 | - | |
Hepe04g1125 | 403 | Pfam | U-box domain | 10 | 78 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Hepe04g1125 | 403 | FunFam | RING-type E3 ubiquitin transferase | 2 | 82 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g1842 | Hepe-Chr1:83339379 | Hepe04g1125 | Hepe-Chr4:66242902 | 2.42e-39 | dispersed | |
Hepe04g1125 | Hepe-Chr4:66242902 | Hepe08g0193 | Hepe-Chr8:1750951 | 1.37e-41 | dispersed | |
Hepe08g1231 | Hepe-Chr8:13091378 | Hepe04g1125 | Hepe-Chr4:66242902 | 2.83e-29 | transposed | |
Hepe08g1253 | Hepe-Chr8:13367380 | Hepe04g1125 | Hepe-Chr4:66242902 | 1.16e-140 | transposed | |
Hepe10g1828 | Hepe-Chr10:55025134 | Hepe04g1125 | Hepe-Chr4:66242902 | 1.16e-10 | transposed | |
Hepe04g0644 | Hepe-Chr4:59663734 | Hepe04g1125 | Hepe-Chr4:66242902 | 8.01e-29 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g1125 | - | - | - | 0.0 |