Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1125 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGGTGTCCGATCTCGCTAGACGTGATGAAATCCCCTGTAAGTTTGTGTACCGGAGTTACTTACGATCGTTCCAGCATCCAGAAATGGCTTGACAATGGAAACAATACTTGTCCGGCCACCATGCAGGTTCTTCACTCCAAAGAGTTCGTTCCAAACAACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCTTCGTCGCCGAGTTCACTCGCCCGATTCCTCCCCTGTTCTCTCCTCCGATCAAATTCTCCGCCTTATCAAGCGCGTGGAGATCGATCAATCTCGCGCCGATTCGCTCACGCGGCTGGTCTCTTTCGCCGCTGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATCGACGGTCTCGTTCCGGTTCTTGTCGATCTTCTTGGCAATGTCGATGGCGATTTGGTTGAGCAGACGGTGAGGCTGTTGCATTTGATTCGGAGTGAAATTGATGATAAGGAGCGGTTTGCAAAGTCGATGTTGAAAGGCGATCGAAATCGTATTTCGTCTCTGCTTCTTGTTCTACGGAAAGGAACCGTCGAATTGAAAATATGTTCGGCGAATCTGTTAGAGCATCTCGCAATCGACGCCGAGGCGAAGATTAGGATCGCGGAAACGGAAGGATTGATGGAAGAATTACTGAAATTAATCAACTCAGAAAGCGATCCAGCCCTAATCGAATCAATCCTGTCGTGCCTAATTTCAATTTCAATGCCGAAACGGATCAAACTCAAATTAGTCCATCTCGGAGCGATAAGATCGGTAACAAAGCTTCTGACGGAGGCGAACATTTCGATAACGGAGAAGATTCTGAAAGTGCTGGAAACGGCGTCGACGGTGAGGGAAGGGAGGACGGAGATCGGAGAGGACGCAGGGTGCGTGGCGGCGATAGTACAGAAAGTGCTGAAGGTGTCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGTGTTTGTTATCTGTTCAGAGACGAGAAAGCGGCGGAGGCGCTGACGAAGGCGAATGGATTGACGAAGATATTGCTGTTAATGCAGAGCAATTGCTCGGCGTCGGTCCGGCAGATGGCGAGAGATTTGCTGAGGATATTTCGGATCAATTCGAAATCGTGCTTATCGAGTTATGATACTAAAACTACGCATATCATGCCCTGTTAG 1212 49.5 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLHSKEFVPNNNLHRLIQIWSDSLRRRVHSPDSSPVLSSDQILRLIKRVEIDQSRADSLTRLVSFAAESVENRRLLCGIDGLVPVLVDLLGNVDGDLVEQTVRLLHLIRSEIDDKERFAKSMLKGDRNRISSLLLVLRKGTVELKICSANLLEHLAIDAEAKIRIAETEGLMEELLKLINSESDPALIESILSCLISISMPKRIKLKLVHLGAIRSVTKLLTEANISITEKILKVLETASTVREGRTEIGEDAGCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSASVRQMARDLLRIFRINSKSCLSSYDTKTTHIMPC 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66242902 66244454 - Hsped.04g11250.1 Hepe04g1125 568263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1125 403 SUPERFAMILY ARM repeat 109 387 IPR016024 -
Hepe04g1125 403 SUPERFAMILY RING/U-box 6 78 - -
Hepe04g1125 403 Gene3D - 94 396 IPR011989 -
Hepe04g1125 403 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1125 403 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1125 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 86 IPR013083 -
Hepe04g1125 403 PANTHER WDSAM1 PROTEIN 7 402 IPR045185 GO:0061630(InterPro)
Hepe04g1125 403 CDD RING-Ubox_PUB 11 63 IPR045210 -
Hepe04g1125 403 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1125 403 FunFam RING-type E3 ubiquitin transferase 2 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1842 Hepe-Chr1:83339379 Hepe04g1125 Hepe-Chr4:66242902 2.42e-39 dispersed
Hepe04g1125 Hepe-Chr4:66242902 Hepe08g0193 Hepe-Chr8:1750951 1.37e-41 dispersed
Hepe08g1231 Hepe-Chr8:13091378 Hepe04g1125 Hepe-Chr4:66242902 2.83e-29 transposed
Hepe08g1253 Hepe-Chr8:13367380 Hepe04g1125 Hepe-Chr4:66242902 1.16e-140 transposed
Hepe10g1828 Hepe-Chr10:55025134 Hepe04g1125 Hepe-Chr4:66242902 1.16e-10 transposed
Hepe04g0644 Hepe-Chr4:59663734 Hepe04g1125 Hepe-Chr4:66242902 8.01e-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1125 - - - 0.0