Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1125 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGGTGTCCGATCTCGCTAGACGTGATGAAATCCCCTGTAAGTTTGTGTACCGGAGTTACTTACGATCGTTCCAGCATCCAGAAATGGCTTGACAATGGAAACAATACTTGTCCGGCCACCATGCAGGTTCTTCACTCCAAAGAGTTCGTTCCAAACAACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCTTCGTCGCCGAGTTCACTCGCCCGATTCCTCCCCTGTTCTCTCCTCCGATCAAATTCTCCGCCTTATCAAGCGCGTGGAGATCGATCAATCTCGCGCCGATTCGCTCACGCGGCTGGTCTCTTTCGCCGCTGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATCGACGGTCTCGTTCCGGTTCTTGTCGATCTTCTTGGCAATGTCGATGGCGATTTGGTTGAGCAGACGGTGAGGCTGTTGCATTTGATTCGGAGTGAAATTGATGATAAGGAGCGGTTTGCAAAGTCGATGTTGAAAGGCGATCGAAATCGTATTTCGTCTCTGCTTCTTGTTCTACGGAAAGGAACCGTCGAATTGAAAATATGTTCGGCGAATCTGTTAGAGCATCTCGCAATCGACGCCGAGGCGAAGATTAGGATCGCGGAAACGGAAGGATTGATGGAAGAATTACTGAAATTAATCAACTCAGAAAGCGATCCAGCCCTAATCGAATCAATCCTGTCGTGCCTAATTTCAATTTCAATGCCGAAACGGATCAAACTCAAATTAGTCCATCTCGGAGCGATAAGATCGGTAACAAAGCTTCTGACGGAGGCGAACATTTCGATAACGGAGAAGATTCTGAAAGTGCTGGAAACGGCGTCGACGGTGAGGGAAGGGAGGACGGAGATCGGAGAGGACGCAGGGTGCGTGGCGGCGATAGTACAGAAAGTGCTGAAGGTGTCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGTGTTTGTTATCTGTTCAGAGACGAGAAAGCGGCGGAGGCGCTGACGAAGGCGAATGGATTGACGAAGATATTGCTGTTAATGCAGAGCAATTGCTCGGCGTCGGTCCGGCAGATGGCGAGAGATTTGCTGAGGATATTTCGGATCAATTCGAAATCGTGCTTATCGAGTTATGATACTAAAACTACGCATATCATGCCCTGTTAG 1212 49.5 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLHSKEFVPNNNLHRLIQIWSDSLRRRVHSPDSSPVLSSDQILRLIKRVEIDQSRADSLTRLVSFAAESVENRRLLCGIDGLVPVLVDLLGNVDGDLVEQTVRLLHLIRSEIDDKERFAKSMLKGDRNRISSLLLVLRKGTVELKICSANLLEHLAIDAEAKIRIAETEGLMEELLKLINSESDPALIESILSCLISISMPKRIKLKLVHLGAIRSVTKLLTEANISITEKILKVLETASTVREGRTEIGEDAGCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSASVRQMARDLLRIFRINSKSCLSSYDTKTTHIMPC 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66242902 66244454 - Hsped.04g11250.1 Hepe04g1125 568263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1125 403 SUPERFAMILY ARM repeat 109 387 IPR016024 -
Hepe04g1125 403 SUPERFAMILY RING/U-box 6 78 - -
Hepe04g1125 403 Gene3D - 94 396 IPR011989 -
Hepe04g1125 403 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1125 403 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1125 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 86 IPR013083 -
Hepe04g1125 403 PANTHER WDSAM1 PROTEIN 7 402 IPR045185 GO:0061630(InterPro)
Hepe04g1125 403 CDD RING-Ubox_PUB 11 63 IPR045210 -
Hepe04g1125 403 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g1125 403 FunFam RING-type E3 ubiquitin transferase 2 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1125 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1842 Hepe-Chr1:83339379 Hepe04g1125 Hepe-Chr4:66242902 2.42e-39 dispersed
Hepe04g1125 Hepe-Chr4:66242902 Hepe08g0193 Hepe-Chr8:1750951 1.37e-41 dispersed
Hepe08g1231 Hepe-Chr8:13091378 Hepe04g1125 Hepe-Chr4:66242902 2.83e-29 transposed
Hepe08g1253 Hepe-Chr8:13367380 Hepe04g1125 Hepe-Chr4:66242902 1.16e-140 transposed
Hepe10g1828 Hepe-Chr10:55025134 Hepe04g1125 Hepe-Chr4:66242902 1.16e-10 transposed
Hepe04g0644 Hepe-Chr4:59663734 Hepe04g1125 Hepe-Chr4:66242902 8.01e-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1266 . . Bda04g00334 . . . . . Cmo02g00625 . Cma03g01083 Cma07g00789 Car03g00973 Car07g00775 Sed10g0492 Cpe19g00539 Cpe10g00346 Bhi03g01378 Tan03g1327 Cmetu08g0065 . Hepe04g1125 . . Cla01g01528 Cam01g1597 Cec04g1242 Cco04g1311 Clacu01g1622 Cmu01g1508 Cre04g1187 . . Cone6ag1295 . Lsi01g01136 . . Cme08g01071 . . . . . Bpe06g00274 . . . . Cmo07g00812 . . . . Cpe05g01067 . Bhi10g02332 Tan07g0873 Cmetu11g1820 . Hepe08g1253 . . Cla02g00066 Cam02g0068 Cec02g0070 Cco02g0063 Clacu02g0067 Cmu02g0066 Cre02g0405 Lsi10g00713 Csa06g02795 Chy02g01040 Cme11g00070
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002606 1 2 1 0 1 2 3 2 2 1 2 2 3 2 2 2 2 4 3 2 2 3 2 3 2 2 2 1 2 1 59