Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1153 ATGATACCCTTTTTCCCATCTTCTTCAAATTTCCTTCTCACCCTCTTTTTCTTACTTCTCTCCCTCTCTGCTTCCTCTGCAACTCCTTCTCCTCCTCACAGAGACGCCCAGCAGCTGATTTCCTTCAAATCTTCACTTCCAAATCCGACCCTCCTCCAAAACTGGCTCTCCAATGGCGACCCATGTTCGTTTTCCGGCATTACCTGCAAGGAAACCAGAGTCTCCGCCATAGATTTGAGCTTCTCCTCTTTGAGCTCTAATTTCAGCCATGTCTTTCCTTTGCTTGCAACTCTCGACCATTTGGAATCGATTTCCCTTAAATCCACTAACCTCACTGGCTCCATTTCTCTCCCCTCTGGATTCAAGTGTAGCCCTCTGCTTTCTTCTCTAGATCTGTCCCTTAATGCTCTGTTTGGCTCTGTTTCTGATGTCTCCAACTTAGGGTTTTGCGCTAATCTCAAGTCGCTTAATCTCTCCTTTAACTCTTTTGATTTCCCCCCATCGAAAGATTCTGCCCCCCCGGGATTAACCCTCGATTTGCAGGTTCTCGATCTCTCTTCCAATCGGATTGTTGGGTCGAAATTAGTTCCGTGGATTTTCTCACGTGGGTGTGGTGATTTGCAGTTCTTGGCATTGAAGAGCAACAAAATAAGCGGAGAGATTAATCTCTCGTCGTGTAATAAACTCCAGCATTTGGATATTTCCGCCAACAATTTTTCTGTGGGTATTCCGCCGTTGGGCGATTGCTCTGTTTTGGAGTATCTTGATATCTCCGGCAATAAGTTCACCGGCGGCGACGTTGGTCATGCTCTGTCTTCTTGTCTTCAGCTCAGCTTTCTGAATCTCTCCAGCAACCAGTTTGGAGGTCCGATTCCTTCGATTCCGTCGTCAAATTTGTGGTTTCTTTCGCTTGCGAACAACCATTTCCAAGGGGAGATTCCTGTAAGTATTGCGGATTTGTGTTCTAGTTTGGTTGAGCTGGATCTTTCTTCTAATAGTTTGGTTGGGGGTTTGCCTTCTGGTTTGGGGTCTTGTTCTTCGTTGCAAACTTTGGACATTTCGAAAAATAACCTCTCTGGTGAGCTCCCCATTGCTGTTTTTGCCAAAATGAGTAGTCTCAAGAGGCTCTCTGTTTCGGATAATAAGTTTTTTGGGGCTTTGTCGGATTCTTTGTCTCAGCTTACTTCTTTGAGCTCTCTGGATCTGAGTTCTAATAACTTTACGGGGTCGATTCCGGCCGGGCTGTGTAAAGACCCGAATAACAGATTGAAGGAATTGTTTCTACAGAACAATTGGTTGACAGGGCGAATCCCTGCAAGTATTAGTAATTGTTCTGAGCTGGTTTCTCTTGATTTGAGCTTCAACTTCCTGAGTGGAACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAACCAGCTGGAGGGGGAGATTCCATCGGATTTTAGCAACTTTCAGGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACCGGGACGATTCCTTCCGGGTTAAGCAACTGCACGAACTTGAACTGGATTTCCTTGTCGAATAATCGGATGAGCGGAGAGATTCCCGCCTGGATTGGGCGCCTGCCGAGCCTTGCGATCCTTAAGCTCAGCAACAACTCATTCTACGGTAGGATTCCTCCGGAGCTGGGCGATTGTCGGAGCTTGATCTGGCTTGACCTGAATACAAATTTGTTGAATGGAACGATCCCTCCGGAGCTGTTTCGACAATCGGGTAACATTGCTGTAAACTTTATCACAGGGAAGTCATATGCTTACATTAAGAATGATGGTAGCAAGCAGTGCCATGGAGCTGGAAATTTGCTTGAGTTTGCTGGAATAAGACAGGAACAAGTGAACAGGATTTCAAGCAAGAGTCCCTGCAATTTCACCAGGGTTTATAAAGGAATGACTCAGCCGACGTTTAATCATAACGGGTCGATGATCTTTCTCGATCTTTCACACAATATGTTGTCTGGTAGTATTCCCAAGGAGATTGGTATTACAAACTATCTCTATATATTGGATTTGGGGCATAACAGTCTTTCAGGAGCCATTCCGCAGCAGCTCGGCGACTTGACGAAACTTAACATTCTTGATCTCTCAAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTGTCAAACAATCATCTCAACGGTTCAATACCCGAATCAGCTCAGTTTGAAACATTCCCGGCATCTGGTTTTGCGAATAATTCTGGCCTCTGTGGGTATCCTCTACCTACATGTGGGGTTGATCCAGCAGCAAATGCGAATTCTCAGCATCAACGATCTCATAGGAAACAGGCATCGCTTGCGGGGAGCGTGGCGATGGGGCTACTCTTCTCCCTCTTCTGTATATTCGGTCTGATTATTGTCGTTATCGAGATGAGGAAAAGAAGGAAAAAGAAGGATTCTACTCTTGATTCTTATGTCGAGAGTCATTCCCATTCAGGCGCGACGACCACTGTTAATTGGAAGTTAACCAGTAACCGTGAAGCATTGAGCATCAATCTTGCAACATTCGAGAAGCCACTTCGGAAGCTTACATTTGCAGATCTTCTCGAGGCGACGAATGGCTTCCACAACGATAGTCTGATTGGTTCAGGGGGTTTCGGCGACGTATATAAGGCTCAATTGAAGGATGGAAGCATTGTAGCGATCAAGAAGCTGATTCATGTCAGTGGACAGGGCGATAGGGAGTTCACTGCAGAAATGGAAACAATTGGCAAAATCAAACACCGAAACCTGGTTCCACTTCTTGGCTACTGCAAAGTCGGAGAAGAACGGCTTCTCGTGTATGAGTACATGAAATATGGAAGCTTGGAAGACGTTTTACACGACGAGAAGAAGAGCGGGATCAAACTGAATTGGGCTGCAAGAAGGAAGATTGCCCTTGGGGCCGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATTCCTCACATCATTCACAGGGACATGAAATCAAGCAATGTCTTGCTGGATGAGACCTTGGAAGCCAGAGTCTCTGATTTTGGAATGGCAAGACTAATGAGTGCCATGGACACCCATTTGAGTGTCAGCACATTAGCCGGAACACCCGGTTACGTCCCTCCAGAATATTATCAAAGCTTTCGATGTTCCACAAAAGGCGATGTTTACAGTTACGGTGTCGTTATGCTCGAGCTCTTAACAGGAAAGCGACCCACAGACTCTGCCGATTTCGGGGATAACAATCTCGTCGGATGGGTAAAACAACACGCCAAGTTGGACCTAACCGACGTTTTCGATCCCGAGCTCATAAAGGAGGATCCAAGCCTCAAGATAGAGCTTTTAGAACACTTGAAGGTAGCTGTTGCTTGCTTAGATGATAGGTCATGGCGGCGTCCAACAATGATCCAAGTGATGACAATGTTCAAGGAAATCCAAGCGGGGTCAGGGATGGATTCGCAATCTACGATCGGAACCGACAACGGATTCAGCGTCGACATGATAGACATGAGCTTAAAGGAAGTACCAGAAGGCAAGTAA 3582 46.04 MIPFFPSSSNFLLTLFFLLLSLSASSATPSPPHRDAQQLISFKSSLPNPTLLQNWLSNGDPCSFSGITCKETRVSAIDLSFSSLSSNFSHVFPLLATLDHLESISLKSTNLTGSISLPSGFKCSPLLSSLDLSLNALFGSVSDVSNLGFCANLKSLNLSFNSFDFPPSKDSAPPGLTLDLQVLDLSSNRIVGSKLVPWIFSRGCGDLQFLALKSNKISGEINLSSCNKLQHLDISANNFSVGIPPLGDCSVLEYLDISGNKFTGGDVGHALSSCLQLSFLNLSSNQFGGPIPSIPSSNLWFLSLANNHFQGEIPVSIADLCSSLVELDLSSNSLVGGLPSGLGSCSSLQTLDISKNNLSGELPIAVFAKMSSLKRLSVSDNKFFGALSDSLSQLTSLSSLDLSSNNFTGSIPAGLCKDPNNRLKELFLQNNWLTGRIPASISNCSELVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRMSGEIPAWIGRLPSLAILKLSNNSFYGRIPPELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGITNYLYILDLGHNSLSGAIPQQLGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPTCGVDPAANANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRRKKKDSTLDSYVESHSHSGATTTVNWKLTSNREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDEKKSGIKLNWAARRKIALGAARGLAFLHHNCIPHIIHRDMKSSNVLLDETLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDLTDVFDPELIKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGTDNGFSVDMIDMSLKEVPEGK 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66685738 66689783 + Hsped.04g11530.1 Hepe04g1153 568291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1153 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1006 1018 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1153 1193 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Hepe04g1153 1193 PRINTS Leucine-rich repeat signature 397 410 - -
Hepe04g1153 1193 PRINTS Leucine-rich repeat signature 704 717 - -
Hepe04g1153 1193 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 651 773 - -
Hepe04g1153 1193 FunFam serine/threonine-protein kinase BRI1-like 2 845 959 - -
Hepe04g1153 1193 ProSitePatterns Protein kinases ATP-binding region signature. 890 913 IPR017441 GO:0005524(InterPro)
Hepe04g1153 1193 Pfam Leucine rich repeat 683 741 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 Pfam Leucine rich repeat 347 407 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 Pfam Leucine rich repeat 494 552 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 SUPERFAMILY RNI-like 269 584 - -
Hepe04g1153 1193 Pfam Protein kinase domain 884 1153 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1153 1193 SMART LRR_typ_2 728 751 IPR003591 -
Hepe04g1153 1193 SMART LRR_typ_2 321 345 IPR003591 -
Hepe04g1153 1193 SMART LRR_typ_2 492 516 IPR003591 -
Hepe04g1153 1193 SMART LRR_typ_2 346 369 IPR003591 -
Hepe04g1153 1193 SMART LRR_typ_2 565 588 IPR003591 -
Hepe04g1153 1193 SMART LRR_typ_2 394 418 IPR003591 -
Hepe04g1153 1193 SMART LRR_typ_2 704 727 IPR003591 -
Hepe04g1153 1193 SMART LRR_typ_2 540 564 IPR003591 -
Hepe04g1153 1193 SMART LRR_typ_2 370 393 IPR003591 -
Hepe04g1153 1193 SUPERFAMILY L domain-like 650 769 - -
Hepe04g1153 1193 Pfam Leucine Rich Repeat 661 677 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 Pfam Leucine Rich Repeat 447 468 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 Pfam Leucine Rich Repeat 422 444 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 Pfam Leucine Rich Repeat 323 345 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 Pfam Leucine Rich Repeat 277 294 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Hepe04g1153 1193 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 457 1158 IPR051716 GO:0004674(PANTHER)
Hepe04g1153 1193 SUPERFAMILY RNI-like 54 292 - -
Hepe04g1153 1193 Gene3D Phosphorylase Kinase; domain 1 843 959 - -
Hepe04g1153 1193 Gene3D - 595 655 - -
Hepe04g1153 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 177 420 - -
Hepe04g1153 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 421 603 - -
Hepe04g1153 1193 SMART serkin_6 884 1156 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1153 1193 FunFam Brassinosteroid LRR receptor kinase 960 1161 - -
Hepe04g1153 1193 ProSiteProfiles Protein kinase domain profile. 884 1159 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1153 1193 Gene3D Ribonuclease Inhibitor 39 773 IPR032675 -
Hepe04g1153 1193 Pfam Brassinosteroid receptor island domain 590 654 IPR045381 -
Hepe04g1153 1193 SUPERFAMILY Protein kinase-like (PK-like) 870 1161 IPR011009 -
Hepe04g1153 1193 Gene3D Transferase(Phosphotransferase) domain 1 960 1161 - -
Hepe04g1153 1193 FunFam Serine/threonine-protein kinase BRI1-like 1 597 654 - -
Hepe04g1153 1193 CDD STKc_IRAK 890 1159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2585 Hepe-Chr2:72924301 Hepe04g1153 Hepe-Chr4:66685738 4.43e-158 dispersed
Hepe04g1153 Hepe-Chr4:66685738 Hepe07g0174 Hepe-Chr7:1547408 1.62e-95 dispersed
Hepe04g1575 Hepe-Chr4:71253623 Hepe04g1153 Hepe-Chr4:66685738 1.90e-50 dispersed
Hepe09g0556 Hepe-Chr9:5236992 Hepe04g1153 Hepe-Chr4:66685738 2.70e-43 dispersed
Hepe04g0672 Hepe-Chr4:60200021 Hepe04g1153 Hepe-Chr4:66685738 5.65e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72738 PF00069 Pkinase 1.40E-45 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1153 K13415 - csv:101209118 2073.51