Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1154 ATGGCCTCAGAATTAGAAGAGATAATGCTGAGTACTCATCTATTGCAACCCCAACACCAAAATAACTATTTATTTTCTTTCCCTCATCAATATCAAAACAACAATTTTCTTCATTTCTCCGGCGCCGTCGCCGGCGCCGACCAACAACAACAACAACCAATTCTGTTTTCTTTGAAACCCTCTCTTCTTCACTTCCCTTCAACAACCACATCTTCACCTTCTTCCTCTCTCTGGGATGTGGGGGAGAGCTTTATGAGGGGGAGAAATTGGTGTGGTGGCGGTGGCGGTGGCGGTGGCGACGGAGACAACAACCGTAAGCTAGGGTTGAGGGTGTCGACGGCGGCGGCGACGATGAAGAGGATAAAAGGGAGAAAGAAAGTGAGAGAGCCAAGATTCTGCTTCAAAACCATGAGCGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAGAAAGTTGTTAAGAACACCCTCCATCCAAGGAGTTACTATCGTTGCACACAAGACAATTGTAGGGTAAAGAAGCGAGTTGAACGATTAGCAGAAGATCCGAGAATGGTGATAACGACCTACGAAGGACGACACGCTCATTCACCGTCACCTGATAATTTAGAAGAGACGATGGGTTCGCTACCGTCGGGCTGCCTTAACAACTTCTTCTGGTAG 675 47.26 MASELEEIMLSTHLLQPQHQNNYLFSFPHQYQNNNFLHFSGAVAGADQQQQQPILFSLKPSLLHFPSTTTSSPSSSLWDVGESFMRGRNWCGGGGGGGGDGDNNRKLGLRVSTAAATMKRIKGRKKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSPDNLEETMGSLPSGCLNNFFW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 66707519 66709688 - Hsped.04g11540.1 Hepe04g1154 568292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1154 224 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 110 205 IPR044810 GO:0003700(InterPro)
Hepe04g1154 224 ProSiteProfiles WRKY domain profile. 138 203 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1154 224 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1154 224 SMART WRKY_cls 143 202 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1154 224 FunFam WRKY transcription factor 57 129 203 - -
Hepe04g1154 224 SUPERFAMILY WRKY DNA-binding domain 135 202 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1154 224 Gene3D WRKY domain 130 196 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1154 Hepe-Chr4:66707519 Hepe04g1972 Hepe-Chr4:74567774 7.83e-33 dispersed
Hepe04g1154 Hepe-Chr4:66707519 Hepe04g1162 Hepe-Chr4:66823337 1.22e-24 proximal
Hepe01g0632 Hepe-Chr1:68203833 Hepe04g1154 Hepe-Chr4:66707519 2.86e-12 transposed
Hepe05g2102 Hepe-Chr5:71598058 Hepe04g1154 Hepe-Chr4:66707519 1.46e-47 transposed
Hepe10g0780 Hepe-Chr10:14879773 Hepe04g1154 Hepe-Chr4:66707519 4.66e-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55407 PF03106 WRKY 9.20E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1154 - - - 0.0