Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1181 ATGGCGAATGAGTTTGGTGAATCAACTAGTGTGCCACATCAAAACCCCTCTTATTCCAGTAATAGTGACAGCACTAACAATGATACTGGCGATTTCGAATGCAATATTTGCTTCGAGTTAGCTCAAGACCCGATTATCACTCTTTGTGGCCACCTCTTTTGCTGGCCTTGTCTCTATAGATGGCTGCATCATCACTCCCAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCCCTTTATGGTAGGGGTAAAATACCATCCGACCCAAGATTAACCAGATATCCCGGTATCGATATTCCAAATCGCCCTGCTGGGCAAAGGCCTCAAACAGCACCTCCCCCTGTTGCTAATGAATTTGCAAACTATGGATTTGGATTCACTGGTGGCTTTATGCCAATGGCAACTGCAAGGATTGGCAACTTCACTTTGGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACGGTTTATGGAACTACTTCTGGTTACCCCTATGCATTCAACACATTCCATGGGGGTCATGGTCATCATTTTCCGCAACCGTCGAGTCGAGGTCAGCATGCTGATAACGTATTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTTATTCTTGCCTTGCTTTGGTGGTGA 687 44.83 MANEFGESTSVPHQNPSYSSNSDSTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKIPSDPRLTRYPGIDIPNRPAGQRPQTAPPPVANEFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPSSRGQHADNVLKNLLLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 67074355 67076011 + Hsped.04g11810.1 Hepe04g1181 568319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1181 228 Pfam Ring finger domain 33 75 IPR001841 -
Hepe04g1181 228 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 88 - -
Hepe04g1181 228 SUPERFAMILY RING/U-box 30 87 - -
Hepe04g1181 228 CDD RING-HC_AtRMA-like 32 76 - -
Hepe04g1181 228 SMART ring_2 34 74 IPR001841 -
Hepe04g1181 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Hepe04g1181 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Hepe04g1181 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Hepe04g1181 228 MobiDBLite consensus disorder prediction 1 25 - -
Hepe04g1181 228 MobiDBLite consensus disorder prediction 98 118 - -
Hepe04g1181 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 220 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1181 Hepe-Chr4:67074355 Hepe05g0517 Hepe-Chr5:7080281 4.82e-26 dispersed
Hepe10g0677 Hepe-Chr10:8965466 Hepe04g1181 Hepe-Chr4:67074355 1.81e-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1181 K10666 - csv:101205026 442.58