Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1188 ATGGGAATCGCAAAAGGTCCATTAATTTTGTACAATAAGCCTACAAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCAAGGAATCTTCACCTTCTCTAATGGCACCAGCTTGGACAAATCCAATTCCCCCACCGCTCACCAGATCCGCCGCGATAAGCTCCGTCTCGACGCCTTCTCCGACGATCCACTTCCCCCGTCCACGGTGGCGGGAATAAACGAACACGAACACGACCACCATCACCATCACCATCACCACCACCAACAACAACTTCATCATGTCTATGCCGCCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACACCCTCCTCCGCCCCCGTCGAATTCTCCGATCACAATTTCCGAACTTTACGATCGCCCAATTCGGCCGCGGCCATGCAGCTTTTTTTGATGAACCCTCCTCCACCACCGCCACCGCGATCCCCGTCGCCACCCTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCGCCTGCGAACTCTCTTCAGGGTTTCGAAGGTGGTGGCATCGGAGATCAGGCGGCCTTCGGCCAATTCGCTGTCGTCGAAAGTCAAGGGCTTTCACTCTCACTTCACTCGTCCTCCTTACATCACTTGGAGGACGCCGCGACCGCTGCGGCTGCCGCTGCAAAAGCCGATGAATTGCGAATTAGGGAGGGTGGGATTTTGTATAATTACAACAACAATAATCAAGTCCATGGAGGAGGAGGAAGTGGATCAACATCCTCAATTTTGCAATATTCTTTTAGAAATAATTCAGAGAACTCTCCTCATAGCTTTCAAGGTTCACAAATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCTTCTTTGGGAGTTGTAAATGTTTTGAGGAATTCAAAATATGTCAAAGCTGCACAAGAATTGCTTGAGGAATTTTGTAGTGTTGGGAGGGTTCAATTGAAGAAGACCAAGTTCAATATCAGGCAAAACCCCAATCCCGAAACCGCCGCCGCGGCAGGCGGTGGCGGCTCTTCATCGTCGTCGAAGGATCAACCTCCCTTATCGGCTGCTGATAGAATTGAGCATCAGCGGAGGAAGGTCAAACTATTGTCCATGCTTGATGAGGTCGAGCGCAGATATAACTTGTACCGCGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTGGTGATGGGGTTCGGGGCAGCCGCGCCCTACACGACGCTAACGCAAAAGGCGATGTCGAGGCACTTCCGATGCCTAAAAGACGCGATAACGGAGCAGTTAAAGCAGAGCTACGAGGCATTAGGGGAGAAAGGAGGAAATGGAGGGTCGGGAATAACAAAAGGAGAGACACCAAGGCTGAAGCTTCTGGAACAGAGCCTCCGGCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGACCACAGCGTGGCCTTCCTGAAAGATCTGTCAACATTCTCAGAGCTTGGCTGTTCGAGCATTTTCTTCATCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCAAATTGGTTCATAAATGCAAGAGTTCGATTGTGGAAACCAATGGTGGAAGAAATGTACCAACTTGAGGGCAAAGTCGAAACAGAACATCATCATCATCAACAACAACTATCGGAAGACGACACCACAGACAACAATACTATTAATAACACTGCCATAAATGCACAAAATCCAACACCCACCACCACTCCACCGCCGTCTTCCACCACCGCCGACGAATTCTCGGAGCTGCATGATGTGTGGCGACATGAACATTATGGGACCATTTCTGATGATGTTACAGCGGCTGACATCAATAATAATAATGGTCCCACACTTATAAGATTTGGGACCACCACCGCTACGCCCACCGGTGACGTGTCCCTCACTTTAGGGCTCCGCCACGCCGGAAACACCTCCGCCGCCGCTAATAACCCTTCTTTCTCCCTCAGAGACTTTGGTCACTCTTAG 2043 50.02 MGIAKGPLILYNKPTSCANSSMSHDYHHHQGIFTFSNGTSLDKSNSPTAHQIRRDKLRLDAFSDDPLPPSTVAGINEHEHDHHHHHHHHHQQQLHHVYAATPSGGTMLSDMFNFPPTPSSAPVEFSDHNFRTLRSPNSAAAMQLFLMNPPPPPPPRSPSPPSTSSTLHMLLPNPPANSLQGFEGGGIGDQAAFGQFAVVESQGLSLSLHSSSLHHLEDAATAAAAAAKADELRIREGGILYNYNNNNQVHGGGGSGSTSSILQYSFRNNSENSPHSFQGSQMNPNHQVQIGFGSSLGVVNVLRNSKYVKAAQELLEEFCSVGRVQLKKTKFNIRQNPNPETAAAAGGGGSSSSSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAITEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVETEHHHHQQQLSEDDTTDNNTINNTAINAQNPTPTTTPPPSSTTADEFSELHDVWRHEHYGTISDDVTAADINNNNGPTLIRFGTTTATPTGDVSLTLGLRHAGNTSAAANNPSFSLRDFGHS 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 67154302 67160012 + Hsped.04g11880.1 Hepe04g1188 568326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1188 680 SMART prehox3 296 433 IPR006563 -
Hepe04g1188 680 Pfam Associated with HOX 301 432 IPR006563 -
Hepe04g1188 680 MobiDBLite consensus disorder prediction 61 91 - -
Hepe04g1188 680 Coils Coil 372 399 - -
Hepe04g1188 680 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 214 574 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe04g1188 680 MobiDBLite consensus disorder prediction 147 167 - -
Hepe04g1188 680 Pfam Homeobox KN domain 502 541 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe04g1188 680 SMART HOX_1 485 549 IPR001356 GO:0003677(InterPro)
Hepe04g1188 680 FunFam BEL1-like homeodomain protein 4 488 550 - -
Hepe04g1188 680 MobiDBLite consensus disorder prediction 571 589 - -
Hepe04g1188 680 SUPERFAMILY Homeodomain-like 486 553 IPR009057 -
Hepe04g1188 680 MobiDBLite consensus disorder prediction 332 359 - -
Hepe04g1188 680 MobiDBLite consensus disorder prediction 332 366 - -
Hepe04g1188 680 MobiDBLite consensus disorder prediction 147 161 - -
Hepe04g1188 680 MobiDBLite consensus disorder prediction 557 603 - -
Hepe04g1188 680 CDD homeodomain 485 546 IPR001356 GO:0003677(InterPro)
Hepe04g1188 680 Gene3D - 488 550 - -
Hepe04g1188 680 ProSiteProfiles 'Homeobox' domain profile. 482 545 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1188 Hepe-Chr4:67154302 Hepe10g0889 Hepe-Chr10:24538469 1.73e-125 dispersed
Hepe04g1188 Hepe-Chr4:67154302 HepeContig66g0009 Hepe-ChrContig66:2695455 2.14e-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55411 PF07526 POX 3.40E-49 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1188 - - - 0.0