Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g1188 | ATGGGAATCGCAAAAGGTCCATTAATTTTGTACAATAAGCCTACAAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCAAGGAATCTTCACCTTCTCTAATGGCACCAGCTTGGACAAATCCAATTCCCCCACCGCTCACCAGATCCGCCGCGATAAGCTCCGTCTCGACGCCTTCTCCGACGATCCACTTCCCCCGTCCACGGTGGCGGGAATAAACGAACACGAACACGACCACCATCACCATCACCATCACCACCACCAACAACAACTTCATCATGTCTATGCCGCCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACACCCTCCTCCGCCCCCGTCGAATTCTCCGATCACAATTTCCGAACTTTACGATCGCCCAATTCGGCCGCGGCCATGCAGCTTTTTTTGATGAACCCTCCTCCACCACCGCCACCGCGATCCCCGTCGCCACCCTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCGCCTGCGAACTCTCTTCAGGGTTTCGAAGGTGGTGGCATCGGAGATCAGGCGGCCTTCGGCCAATTCGCTGTCGTCGAAAGTCAAGGGCTTTCACTCTCACTTCACTCGTCCTCCTTACATCACTTGGAGGACGCCGCGACCGCTGCGGCTGCCGCTGCAAAAGCCGATGAATTGCGAATTAGGGAGGGTGGGATTTTGTATAATTACAACAACAATAATCAAGTCCATGGAGGAGGAGGAAGTGGATCAACATCCTCAATTTTGCAATATTCTTTTAGAAATAATTCAGAGAACTCTCCTCATAGCTTTCAAGGTTCACAAATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCTTCTTTGGGAGTTGTAAATGTTTTGAGGAATTCAAAATATGTCAAAGCTGCACAAGAATTGCTTGAGGAATTTTGTAGTGTTGGGAGGGTTCAATTGAAGAAGACCAAGTTCAATATCAGGCAAAACCCCAATCCCGAAACCGCCGCCGCGGCAGGCGGTGGCGGCTCTTCATCGTCGTCGAAGGATCAACCTCCCTTATCGGCTGCTGATAGAATTGAGCATCAGCGGAGGAAGGTCAAACTATTGTCCATGCTTGATGAGGTCGAGCGCAGATATAACTTGTACCGCGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTGGTGATGGGGTTCGGGGCAGCCGCGCCCTACACGACGCTAACGCAAAAGGCGATGTCGAGGCACTTCCGATGCCTAAAAGACGCGATAACGGAGCAGTTAAAGCAGAGCTACGAGGCATTAGGGGAGAAAGGAGGAAATGGAGGGTCGGGAATAACAAAAGGAGAGACACCAAGGCTGAAGCTTCTGGAACAGAGCCTCCGGCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGACCACAGCGTGGCCTTCCTGAAAGATCTGTCAACATTCTCAGAGCTTGGCTGTTCGAGCATTTTCTTCATCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCAAATTGGTTCATAAATGCAAGAGTTCGATTGTGGAAACCAATGGTGGAAGAAATGTACCAACTTGAGGGCAAAGTCGAAACAGAACATCATCATCATCAACAACAACTATCGGAAGACGACACCACAGACAACAATACTATTAATAACACTGCCATAAATGCACAAAATCCAACACCCACCACCACTCCACCGCCGTCTTCCACCACCGCCGACGAATTCTCGGAGCTGCATGATGTGTGGCGACATGAACATTATGGGACCATTTCTGATGATGTTACAGCGGCTGACATCAATAATAATAATGGTCCCACACTTATAAGATTTGGGACCACCACCGCTACGCCCACCGGTGACGTGTCCCTCACTTTAGGGCTCCGCCACGCCGGAAACACCTCCGCCGCCGCTAATAACCCTTCTTTCTCCCTCAGAGACTTTGGTCACTCTTAG | 2043 | 50.02 | MGIAKGPLILYNKPTSCANSSMSHDYHHHQGIFTFSNGTSLDKSNSPTAHQIRRDKLRLDAFSDDPLPPSTVAGINEHEHDHHHHHHHHHQQQLHHVYAATPSGGTMLSDMFNFPPTPSSAPVEFSDHNFRTLRSPNSAAAMQLFLMNPPPPPPPRSPSPPSTSSTLHMLLPNPPANSLQGFEGGGIGDQAAFGQFAVVESQGLSLSLHSSSLHHLEDAATAAAAAAKADELRIREGGILYNYNNNNQVHGGGGSGSTSSILQYSFRNNSENSPHSFQGSQMNPNHQVQIGFGSSLGVVNVLRNSKYVKAAQELLEEFCSVGRVQLKKTKFNIRQNPNPETAAAAGGGGSSSSSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAITEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVETEHHHHQQQLSEDDTTDNNTINNTAINAQNPTPTTTPPPSSTTADEFSELHDVWRHEHYGTISDDVTAADINNNNGPTLIRFGTTTATPTGDVSLTLGLRHAGNTSAAANNPSFSLRDFGHS | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 67154302 | 67160012 | + | Hsped.04g11880.1 | Hepe04g1188 | 568326 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g1188 | 680 | SMART | prehox3 | 296 | 433 | IPR006563 | - | |
Hepe04g1188 | 680 | Pfam | Associated with HOX | 301 | 432 | IPR006563 | - | |
Hepe04g1188 | 680 | MobiDBLite | consensus disorder prediction | 61 | 91 | - | - | |
Hepe04g1188 | 680 | Coils | Coil | 372 | 399 | - | - | |
Hepe04g1188 | 680 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 214 | 574 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe04g1188 | 680 | MobiDBLite | consensus disorder prediction | 147 | 167 | - | - | |
Hepe04g1188 | 680 | Pfam | Homeobox KN domain | 502 | 541 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Hepe04g1188 | 680 | SMART | HOX_1 | 485 | 549 | IPR001356 | GO:0003677(InterPro) | |
Hepe04g1188 | 680 | FunFam | BEL1-like homeodomain protein 4 | 488 | 550 | - | - | |
Hepe04g1188 | 680 | MobiDBLite | consensus disorder prediction | 571 | 589 | - | - | |
Hepe04g1188 | 680 | SUPERFAMILY | Homeodomain-like | 486 | 553 | IPR009057 | - | |
Hepe04g1188 | 680 | MobiDBLite | consensus disorder prediction | 332 | 359 | - | - | |
Hepe04g1188 | 680 | MobiDBLite | consensus disorder prediction | 332 | 366 | - | - | |
Hepe04g1188 | 680 | MobiDBLite | consensus disorder prediction | 147 | 161 | - | - | |
Hepe04g1188 | 680 | MobiDBLite | consensus disorder prediction | 557 | 603 | - | - | |
Hepe04g1188 | 680 | CDD | homeodomain | 485 | 546 | IPR001356 | GO:0003677(InterPro) | |
Hepe04g1188 | 680 | Gene3D | - | 488 | 550 | - | - | |
Hepe04g1188 | 680 | ProSiteProfiles | 'Homeobox' domain profile. | 482 | 545 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g1188 | Hepe-Chr4:67154302 | Hepe10g0889 | Hepe-Chr10:24538469 | 1.73e-125 | dispersed | |
Hepe04g1188 | Hepe-Chr4:67154302 | HepeContig66g0009 | Hepe-ChrContig66:2695455 | 2.14e-141 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55411 | PF07526 | POX | 3.40E-49 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g1188 | - | - | - | 0.0 |