Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1230 ATGCGTTGGTTGCGTAACATCTCCTTTTCCCCTTCCTCCCTAGTCAGGATTCCGGGCACCGGCACCGCCACTGGCAACGGCAACGGTGGTGATTCTCCAACCAGAAAGACCTCCACCACTCCCTCCGCCGATCATAATTATCGGAGACTTACTTGGCGTTTTGGCGCCTCTAAGTATTCCCGCCATAGGAAGCTTCGGAACCTAAGCGGACGTGAACGCGCTGCTGTGGTTGAGCATGCCGTCCCCTTGCCGCTCCCGGAGGTTTCTCGTCCTCATGGGATTTCGAATTCGAATTTGAATTCTGCTACTGGAGATGGGGGTTGCCCTCTTCCGTCTCCCAAGGGTTTACGTGGCCGAGGTGTGGACGACCGCGATGTAGATACAGATAGAGATAGAACTGCACCTCCTCAAAAGATTGGAGCCGGGGCATCATCCGCTAGCGTTCCGATTAAAAGTATATTTGATTCCCGGGAGAGGCAGAAGAAAGAAGAACATGTTGAGACAAGGTCGCCTAGGAGGGTGAATCAAGATGCAACAGGATATCCTGAAAGATCTCGGAACAGTTTTTGGATTGATGTTCCTAGTAGGAGTGCTCCTACTAGTCCTTTTGCAAGTCCTACACTCAGTCCCCAAAGTAATACTTCCGGTAACTTCTCAAATTTCCATTATGTGGCTCCAGTTGGAATGGAAGCCTGGTCTGCACCTGAGCTGCCAATTTTCCATTATGGAACTACAGTAGGAAATATCGTCTGGTCTGCACCGGAGCTGCCACCCTCAGCAATGATGCAAGGGGTTCCTCCTGCATTCTTTGATGGCTCCACATTTAGCTGTGAGAGTTCTCCCATGCATAGTCCAACAGGTATAAGTTCCCACAGAGATCCCAGAAGTCCAACAGGACCTGCATCTCCATTGCACGCCAAGATTTCCCTTGAAACACATGCTACACGTCGTGAAAGTGCTGGTCCTGTTAGTGTCCACCCTTTACCTCTTCCTCCTGGAGTACCGATGCCTTCACCATCAACCTCGATGCTCATGCCATCAACCCAAATGACTTTACCATCAACCCAAATGGCTTTACCATCGACCCAAATGCCTTTACCATCAACCCAAATGCCTTCACCATCAACCCCAATTACACAAGCTAACACTAAAACTGAGTCAATCTCAATGAAAGATCAATGGCAGAAAGGAAAGCTTATTGGCCGGGGAACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAATTATTTCATGATGATCCAAAATCGGCTGAATGTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGCAGTGATATTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCATCCAGGTTCAATTAATAAATATGTCCGGGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCAGGGTTGGCCTACTTGCACAGCACTAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTGTCTGTGATGCAGAAAGATAACAACTCTGATCTTGCTCTAGCTGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGAAAGATACCCCAACAATACCTGAATCATTATCATATGAAGCCAAAGATTTCTTAAAATGCTGCTTTCAGAGGAATCCTGCAGAGAGGTCGACTTCTGCCATGCTGCTCGAACATCCGTTTATGAAAAACTTGCAGCATCCAGATGCTCCATCTTTCTCTCAGGCCGTTGCTGGTGCAAATTTGATGGATAAATGCTATAGCCCAAGTGAACAATATTCAAGTAAATTTGATCAGTCTTTCATGCTTCCAAGCTCACAAAATTCCAAGGGAAAGTTAGCTGCTGAGAGTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACACTTGAGGCCCTTCCTATACTGTCTCCTCCGCCCCCGGTTCACAAGGTGCATCATCTCGGTTCCCCTGCAAATGGGCTCGGCGTTGTAAATCAAACCTATAAGAACTAG 2310 46.32 MRWLRNISFSPSSLVRIPGTGTATGNGNGGDSPTRKTSTTPSADHNYRRLTWRFGASKYSRHRKLRNLSGRERAAVVEHAVPLPLPEVSRPHGISNSNLNSATGDGGCPLPSPKGLRGRGVDDRDVDTDRDRTAPPQKIGAGASSASVPIKSIFDSRERQKKEEHVETRSPRRVNQDATGYPERSRNSFWIDVPSRSAPTSPFASPTLSPQSNTSGNFSNFHYVAPVGMEAWSAPELPIFHYGTTVGNIVWSAPELPPSAMMQGVPPAFFDGSTFSCESSPMHSPTGISSHRDPRSPTGPASPLHAKISLETHATRRESAGPVSVHPLPLPPGVPMPSPSTSMLMPSTQMTLPSTQMALPSTQMPLPSTQMPSPSTPITQANTKTESISMKDQWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPTIPESLSYEAKDFLKCCFQRNPAERSTSAMLLEHPFMKNLQHPDAPSFSQAVAGANLMDKCYSPSEQYSSKFDQSFMLPSSQNSKGKLAAESVIGPLSHHETSDLTVMSRYSPRSTLEALPILSPPPPVHKVHHLGSPANGLGVVNQTYKN 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 67672707 67677878 + Hsped.04g12300.1 Hepe04g1230 568368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1230 769 SUPERFAMILY Protein kinase-like (PK-like) 374 698 IPR011009 -
Hepe04g1230 769 SMART serkin_6 394 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1230 769 FunFam Mitogen-activated protein kinase kinase kinase 5 391 692 - -
Hepe04g1230 769 MobiDBLite consensus disorder prediction 276 338 - -
Hepe04g1230 769 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 177 661 IPR050538 -
Hepe04g1230 769 MobiDBLite consensus disorder prediction 91 105 - -
Hepe04g1230 769 ProSitePatterns Protein kinases ATP-binding region signature. 400 423 IPR017441 GO:0005524(InterPro)
Hepe04g1230 769 MobiDBLite consensus disorder prediction 276 296 - -
Hepe04g1230 769 MobiDBLite consensus disorder prediction 154 172 - -
Hepe04g1230 769 Pfam Protein kinase domain 395 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1230 769 MobiDBLite consensus disorder prediction 117 134 - -
Hepe04g1230 769 Gene3D Transferase(Phosphotransferase) domain 1 390 689 - -
Hepe04g1230 769 ProSiteProfiles Protein kinase domain profile. 394 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1230 769 MobiDBLite consensus disorder prediction 15 45 - -
Hepe04g1230 769 MobiDBLite consensus disorder prediction 85 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1230 Hepe-Chr4:67672707 Hepe06g0686 Hepe-Chr6:50954140 8.10e-106 dispersed
Hepe10g0698 Hepe-Chr10:9319327 Hepe04g1230 Hepe-Chr4:67672707 7.41e-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72743 PF00069 Pkinase 1.50E-67 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1230 - - - 0.0