Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1245 ATGGCACAGAGATCGCTTCCGGCGCCGTTTCTCACCAAGACGTTCCAACTTGTGGACGATCCTGCCACCGACGACATCGTTTCCTGGAATGCAACTGGCTCCACTTTTATCGTCTGGAAAACCGCTGATTTCGCTAGAGATATGCTTCCCATTTACTTTAAACACAACAATTTCTCTAGCTTCGTCCGTCAGCTTAATACTTACGGTTTTCGGAAAATCGTGCAAGACAAATGGGAATTCGCCAACGACAATTTCCGACGGGGTCAGAAGGAGCTACTTTTCAAGATCCGTCGCCGAAAGACGATGATTACGGCGGGAGGAGGCAGCTCTTCGCCGTCAAATTCCGGCGAGGACATCGGATCGACTTCCTCCACGTCCCCGGATTCCAAGAATCCGGGATCGATCGAGATGGAAACGATGGCACAATTTGCTGATCTGACGGAGGAGAATGAGAAATTAAGGAAGGAGAACGAGGTGCTGAATTCTGAACTCGCGCAGACGAAGAAGCAGTGCGACGATCTCGTTGGTTATTTGACTGGGCATTTTAAGGTGGCGCCAGATCAGATCGACAGCATCATGAAGCAAGCGAACAACCCCGGCGGCTCCTCCACTGAATGCTGCGACGGTAAGGTCGAGGAAAAAAAAGACAAGGACGACGGAAAAAAAGACGACGACGAAGAAGAAGAAGAAGAAGACGGCGGCGAAACTGGTGTGAAACTGTTTGGTGTTTGGTTGAAGGAGAAGAAGAAGAAGAAGAAGATGAAAAGGGATCGAGACGAGAAAATGGAGGGCAGTGACGAACCACCTGCGAAAGAGATGAAGTCGGTTGAGACGCACGCGCCGTTGATGACGAGCAGCAACACGCCTGCAACTGAGGACGGAGCGCGTGCATGA 894 50.78 MAQRSLPAPFLTKTFQLVDDPATDDIVSWNATGSTFIVWKTADFARDMLPIYFKHNNFSSFVRQLNTYGFRKIVQDKWEFANDNFRRGQKELLFKIRRRKTMITAGGGSSSPSNSGEDIGSTSSTSPDSKNPGSIEMETMAQFADLTEENEKLRKENEVLNSELAQTKKQCDDLVGYLTGHFKVAPDQIDSIMKQANNPGGSSTECCDGKVEEKKDKDDGKKDDDEEEEEEDGGETGVKLFGVWLKEKKKKKKMKRDRDEKMEGSDEPPAKEMKSVETHAPLMTSSNTPATEDGARA 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 67902340 67903730 - Hsped.04g12450.1 Hepe04g1245 568383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1245 297 Gene3D - 2 101 IPR036388 -
Hepe04g1245 297 MobiDBLite consensus disorder prediction 279 297 - -
Hepe04g1245 297 SMART hsfneu3 6 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1245 297 Coils Coil 136 170 - -
Hepe04g1245 297 FunFam Heat stress transcription factor B-4 2 100 - -
Hepe04g1245 297 MobiDBLite consensus disorder prediction 256 274 - -
Hepe04g1245 297 MobiDBLite consensus disorder prediction 104 134 - -
Hepe04g1245 297 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1245 297 MobiDBLite consensus disorder prediction 193 297 - -
Hepe04g1245 297 SUPERFAMILY Winged helix DNA-binding domain 7 99 IPR036390 -
Hepe04g1245 297 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1245 297 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 247 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Hepe04g1245 297 MobiDBLite consensus disorder prediction 207 221 - -
Hepe04g1245 297 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1245 297 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1245 297 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1245 K09419 - - csv:101216801 343.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1245 Hepe-Chr4:67902340 Hepe08g1292 Hepe-Chr8:14396492 3.66e-50 dispersed
Hepe04g1245 Hepe-Chr4:67902340 Hepe01g1775 Hepe-Chr1:82839182 3.41e-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1074 . . Bda04g00268 . . . . . Cmo03g00995 Cmo07g00722 . . . . Sed14g0845 Cpe19g00618 . Bhi03g01845 Tan03g1538 Cmetu08g0700 . Hepe04g1245 . . Cla01g01646 Cam01g1727 Cec04g1370 Cco04g1439 Clacu01g1752 Cmu01g1632 Cre04g1306 Cone6ag1394 Cone9ag1322 . . Lsi01g00978 Csa06g02938 . Cme08g00568 . . . . . . . . . . . Cma03g00981 Cma07g00708 Car03g00881 Car07g00700 Cpe10g00435 . Bhi10g02300 . . . . . . . . . . . . . . . Chy02g00913 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1586 . 23 237 HSF AT4G17750 53.4 5.0e-60 229.2
Hepe06g1976 . 40 243 HSF AT4G17750 54.4 2.3e-57 220.3
Hepe08g1399 . 35 235 HSF AT4G17750 51.8 1.3e-55 214.5
Hepe08g2670 . 63 250 HSF AT4G17750 51.5 3.1e-46 183.3
Hepe01g1775 . 20 118 HSF AT4G17750 70.7 8.3e-39 158.7
Hepe08g1292 . 14 115 HSF AT4G17750 67.6 9.1e-38 155.2
Hepe04g1245 . 5 170 HSF AT4G17750 51.2 3.5e-37 153.3
Hepe05g1586 . 41 241 HSF AT5G16820 56.8 1.6e-58 224.2
Hepe06g1976 . 41 247 HSF AT5G16820 54.2 5.0e-57 219.2
Hepe03g2034 . 54 264 HSF AT5G16820 56.1 1.1e-56 218.0
Hepe06g1001 . 24 517 HSF AT1G32330 54.1 3.2e-120 429.1
Hepe03g2034 . 26 260 HSF AT1G32330 50.6 7.0e-59 225.3
Hepe05g1586 . 29 237 HSF AT1G32330 51.1 1.3e-57 221.1
Hepe06g1976 . 29 227 HSF AT1G32330 52.7 2.8e-55 213.4
Hepe08g1292 . 20 120 HSF AT1G32330 68.3 6.8e-38 155.6
Hepe01g1775 . 22 117 HSF AT1G32330 71.9 2.0e-37 154.1
Hepe06g1976 . 41 262 HSF AT3G02990 53.1 1.6e-60 230.7
Hepe03g2034 . 54 269 HSF AT3G02990 54.1 4.0e-59 226.1
Hepe05g1586 . 41 240 HSF AT3G02990 55.0 3.4e-58 223.0
Hepe05g1586 . 29 236 HSF AT2G26150 54.9 6.8e-64 241.5
Hepe03g2034 . 21 259 HSF AT2G26150 52.1 4.1e-61 232.3
Hepe06g1001 . 29 243 HSF AT2G26150 58.3 7.0e-61 231.5
Hepe08g2670 . 53 275 HSF AT2G26150 50.7 1.7e-54 210.3
Hepe07g1835 . 5 150 HSF AT2G26150 53.4 5.2e-40 162.2
Hepe06g1001 . 15 220 HSF AT5G03720 52.9 3.5e-51 199.5
Hepe05g1784 . 13 209 HSF AT4G18880 50.5 3.1e-52 203.0
Hepe05g1784 . 7 464 HSF AT4G13980 52.7 1.0e-115 414.1
Hepe05g1586 . 29 216 HSF AT5G43840 55.3 2.6e-53 206.1
Hepe08g1399 . 24 227 HSF AT5G43840 50.5 1.2e-45 180.6
Hepe06g1976 . 29 346 HSF AT3G22830 51.0 1.3e-87 320.5
Hepe05g1586 . 11 241 HSF AT3G22830 61.2 4.6e-80 295.4
Hepe06g1001 . 31 242 HSF AT3G22830 59.0 5.2e-63 238.8
Hepe08g1399 . 24 233 HSF AT3G22830 54.5 5.7e-62 235.3
Hepe08g2670 . 53 253 HSF AT3G22830 50.2 8.5e-50 194.9
Hepe06g1976 . 29 323 HSF AT3G51910 52.3 8.5e-70 260.8
Hepe03g2034 . 38 260 HSF AT3G51910 58.9 3.1e-64 242.3
Hepe05g1586 . 29 237 HSF AT3G51910 57.3 2.1e-60 229.6
Hepe08g1399 . 24 240 HSF AT3G51910 50.7 1.6e-52 203.4
Hepe08g1399 . 24 223 HSF AT3G63350 52.5 1.9e-48 189.9
Hepe08g1292 . 17 117 HSF AT5G62020 68.3 5.9e-40 161.8
Hepe01g1775 . 16 119 HSF AT4G11660 73.1 2.2e-44 176.8
Hepe08g1292 . 16 121 HSF AT4G11660 69.8 1.1e-43 174.5
Hepe04g1245 . 2 100 HSF AT4G11660 70.7 4.4e-40 162.5
Hepe05g0801 . 22 120 HSF AT4G11660 68.7 2.0e-37 153.7
Hepe09g1181 . 11 108 HSF AT4G11660 67.3 3.5e-37 152.9
Hepe06g1001 . 33 126 HSF AT4G11660 69.1 1.3e-36 151.0
Hepe05g0801 . 19 223 HSF AT2G41690 54.3 7.9e-51 197.6
Hepe04g0401 . 27 215 HSF AT2G41690 55.6 9.1e-47 184.1
Hepe01g1775 . 1 343 HSF AT1G46264 50.7 1.0e-88 323.9
Hepe09g1181 . 12 198 HSF AT1G46264 57.5 2.5e-58 223.0
Hepe06g1001 . 33 136 HSF AT1G46264 73.1 8.1e-41 164.9
Hepe05g1784 . 7 104 HSF AT1G46264 71.4 4.2e-37 152.5
Hepe09g0754 . 11 183 HSF AT3G24520 71.1 5.7e-68 255.0
Hepe08g2589 . 48 218 HSF AT3G24520 62.6 3.7e-59 225.7
Hepe05g1586 . 23 237 HSF AT4G17750 53.4 5.0e-60 229.2
Hepe06g1976 . 40 243 HSF AT4G17750 54.4 2.3e-57 220.3
Hepe08g1399 . 35 235 HSF AT4G17750 51.8 1.3e-55 214.5
Hepe08g2670 . 63 250 HSF AT4G17750 51.5 3.1e-46 183.3
Hepe01g1775 . 20 118 HSF AT4G17750 70.7 8.3e-39 158.7
Hepe08g1292 . 14 115 HSF AT4G17750 67.6 9.1e-38 155.2
Hepe04g1245 . 5 170 HSF AT4G17750 51.2 3.5e-37 153.3
Hepe05g1586 . 41 241 HSF AT5G16820 56.8 1.6e-58 224.2
Hepe06g1976 . 41 247 HSF AT5G16820 54.2 5.0e-57 219.2
Hepe03g2034 . 54 264 HSF AT5G16820 56.1 1.1e-56 218.0
Hepe06g1001 . 24 517 HSF AT1G32330 54.1 3.2e-120 429.1
Hepe03g2034 . 26 260 HSF AT1G32330 50.6 7.0e-59 225.3
Hepe05g1586 . 29 237 HSF AT1G32330 51.1 1.3e-57 221.1
Hepe06g1976 . 29 227 HSF AT1G32330 52.7 2.8e-55 213.4
Hepe08g1292 . 20 120 HSF AT1G32330 68.3 6.8e-38 155.6
Hepe01g1775 . 22 117 HSF AT1G32330 71.9 2.0e-37 154.1
Hepe06g1976 . 41 262 HSF AT3G02990 53.1 1.6e-60 230.7
Hepe03g2034 . 54 269 HSF AT3G02990 54.1 4.0e-59 226.1
Hepe05g1586 . 41 240 HSF AT3G02990 55.0 3.4e-58 223.0
Hepe05g1586 . 29 236 HSF AT2G26150 54.9 6.8e-64 241.5
Hepe03g2034 . 21 259 HSF AT2G26150 52.1 4.1e-61 232.3
Hepe06g1001 . 29 243 HSF AT2G26150 58.3 7.0e-61 231.5
Hepe08g2670 . 53 275 HSF AT2G26150 50.7 1.7e-54 210.3
Hepe07g1835 . 5 150 HSF AT2G26150 53.4 5.2e-40 162.2
Hepe06g1001 . 15 220 HSF AT5G03720 52.9 3.5e-51 199.5
Hepe05g1784 . 13 209 HSF AT4G18880 50.5 3.1e-52 203.0
Hepe05g1784 . 7 464 HSF AT4G13980 52.7 1.0e-115 414.1
Hepe05g1586 . 29 216 HSF AT5G43840 55.3 2.6e-53 206.1
Hepe08g1399 . 24 227 HSF AT5G43840 50.5 1.2e-45 180.6
Hepe06g1976 . 29 346 HSF AT3G22830 51.0 1.3e-87 320.5
Hepe05g1586 . 11 241 HSF AT3G22830 61.2 4.6e-80 295.4
Hepe06g1001 . 31 242 HSF AT3G22830 59.0 5.2e-63 238.8
Hepe08g1399 . 24 233 HSF AT3G22830 54.5 5.7e-62 235.3
Hepe08g2670 . 53 253 HSF AT3G22830 50.2 8.5e-50 194.9
Hepe06g1976 . 29 323 HSF AT3G51910 52.3 8.5e-70 260.8
Hepe03g2034 . 38 260 HSF AT3G51910 58.9 3.1e-64 242.3
Hepe05g1586 . 29 237 HSF AT3G51910 57.3 2.1e-60 229.6
Hepe08g1399 . 24 240 HSF AT3G51910 50.7 1.6e-52 203.4
Hepe08g1399 . 24 223 HSF AT3G63350 52.5 1.9e-48 189.9
Hepe08g1292 . 17 117 HSF AT5G62020 68.3 5.9e-40 161.8
Hepe01g1775 . 16 119 HSF AT4G11660 73.1 2.2e-44 176.8
Hepe08g1292 . 16 121 HSF AT4G11660 69.8 1.1e-43 174.5
Hepe04g1245 . 2 100 HSF AT4G11660 70.7 4.4e-40 162.5
Hepe05g0801 . 22 120 HSF AT4G11660 68.7 2.0e-37 153.7
Hepe09g1181 . 11 108 HSF AT4G11660 67.3 3.5e-37 152.9
Hepe06g1001 . 33 126 HSF AT4G11660 69.1 1.3e-36 151.0
Hepe05g0801 . 19 223 HSF AT2G41690 54.3 7.9e-51 197.6
Hepe04g0401 . 27 215 HSF AT2G41690 55.6 9.1e-47 184.1
Hepe01g1775 . 1 343 HSF AT1G46264 50.7 1.0e-88 323.9
Hepe09g1181 . 12 198 HSF AT1G46264 57.5 2.5e-58 223.0
Hepe06g1001 . 33 136 HSF AT1G46264 73.1 8.1e-41 164.9
Hepe05g1784 . 7 104 HSF AT1G46264 71.4 4.2e-37 152.5
Hepe09g0754 . 11 183 HSF AT3G24520 71.1 5.7e-68 255.0
Hepe08g2589 . 48 218 HSF AT3G24520 62.6 3.7e-59 225.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007234 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55424 PF00447 HSF_DNA-bind 3.50E-31 CL0123 Hepe TF