Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1250 ATGGATTGGGTTCGAGGACATGAAATTGGCCACGGTACTTTTGCGACCATCAATTTAGCCATGCCTTCCAAGACTTCTTCTGCTCGATTTCCTCCATTAATGGCGGTTAAATCCTCTGAAGCTATCTGCTCTGCTTCGCTTCAGAACGAGAAGCAAATTTTGGATCTTCTTGGTGATTGCCCACAAGTAATTCGGTGTTTTGGCCAGAGTTGTAGTATCGAGAACGGCGAGAAGTTTTACAATTTGTTACTTGAGTACGCTAGTGGTGGGAGTTTAGCGGACAGAATACAGAGCCACGGTGGCTGCCTGCCGGAATTTGAGGTTCGGCGTTACACGAGGACGATTCTCGAAGGGCTTCGCTTTATTCACGGGAAAGGGTTTGTTCACTGCGATGTAAAGCCGAGGAATATTCTCGTGTTTGGTGACGGCGACGCTAAGATTGCTGATTTCGGATTGTCCAAGAAGGCTGGAGGAAACAGAGGACGATCAGAGGAAGAGGGGGGATTTCAATTGAGAGGCTCTCCTCTGTATATGTCGCCGGAATCGGTGAACGATAACGAGTACGAGTCGCCGTGTGACATATGGGCGGTTGGATGCGCGGCGGTGGAGATGTTGACGGGAAAACCCGCTTGGAATTGCCGGCCGGAATCCAACATCTATTCTCTGTTACTGAAAATTGGGACCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCGGAGGAAGGAAAAGATTTTCTGGGTAAATGTTTGGTGAAGGATCCGAAAAAGAGATGGACGGCTGAGATGCTGTTAAATCACCCATTTATGGCAGACTCCGGCAGCTCTGTTCCATCAACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCTTCAATTCACTCACAAGAGGTCGATCAGAGATTTGAAGAGGAATCAAATTCTTGGTTGAATTCGTCGTGTACGTGGTCGTCTTCTCCGACGGAGCGGCTGCTTAAGCTAGTGGACAATTGGCCAGTTGACTGGTCTTTCACTGACAGTTGGGTCACCGTCAGATGA 1041 48.61 MDWVRGHEIGHGTFATINLAMPSKTSSARFPPLMAVKSSEAICSASLQNEKQILDLLGDCPQVIRCFGQSCSIENGEKFYNLLLEYASGGSLADRIQSHGGCLPEFEVRRYTRTILEGLRFIHGKGFVHCDVKPRNILVFGDGDAKIADFGLSKKAGGNRGRSEEEGGFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAAVEMLTGKPAWNCRPESNIYSLLLKIGTGEELPEIPKDLSEEGKDFLGKCLVKDPKKRWTAEMLLNHPFMADSGSSVPSTSPRCPFDFEDWASIHSQEVDQRFEEESNSWLNSSCTWSSSPTERLLKLVDNWPVDWSFTDSWVTVR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68007687 68009106 + Hsped.04g12500.1 Hepe04g1250 568388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1250 346 Gene3D Transferase(Phosphotransferase) domain 1 94 320 - -
Hepe04g1250 346 CDD STKc_MAPKKK 2 269 - -
Hepe04g1250 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 271 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe04g1250 346 SUPERFAMILY Protein kinase-like (PK-like) 3 312 IPR011009 -
Hepe04g1250 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1250 346 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1250 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524(InterPro)
Hepe04g1250 346 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Hepe04g1250 346 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1250 346 SMART serkin_6 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0231 Hepe-Chr2:2349997 Hepe04g1250 Hepe-Chr4:68007687 2.12e-61 dispersed
Hepe04g1250 Hepe-Chr4:68007687 Hepe08g1182 Hepe-Chr8:12123821 1.30e-137 dispersed
Hepe04g1250 Hepe-Chr4:68007687 Hepe08g0454 Hepe-Chr8:3987877 1.88e-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72745 PF00069 Pkinase 4.60E-54 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1250 - - - 0.0