Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1254 ATGACAGACCAGCTCTCCAAGCAGACCTCTATTTTTGGCCTACGTTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCCGCTTTTGTGCTCTTTCTGTTTCTAATTTCTCTATGGATTGCCTCCAAACGCTCTCGCAAGAAGATTTCTCACAGACCCACAATTCCAATCGTCTCCAAAGAAATCCAGGAGATCAGAATCGACCATGCCCTCGCTCAAAACCAAGAGCATAAGCCAAGTAGAGCCCATTTTCAGCTCGACCCACTTCCGGAACCGGAGCCAATCCCTGGAATTGAGCGGCAATCGTTGCTTTCGTTGCCCCAGGAGGAAGAGCGAGTGAATAGGATTCATATTGAGATCGGTAAGGATCATAGGATTTCATTTCCTGACCGACTTGGTCGGTCGTCTTCCTCGCAGGGCAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGGCATTGGTACACTCTCAGAGAGCTTGAAGCTTCGACTAATGGTTTCTCCCCTGATAATGTAATTGGTGAAGGTGGGTATGGAATTGTTTACCATGGCATATTGGAGGATGGAACTCAGTTTGCTGTTAAGAATTTGCTCAACAATAGGGGACAAGCTGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACATAAGAACTTAGTTAGATTGCTTGGATACTGTGCTGAAGGTGCTCATAGGATGCTTGTGTATGAGTACATAAATAATGGAAACTTGGAACAATGGATTCATGGGGATGTAGGACCTTCCAGTCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACTGCAAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCGAAGGTTGTTCACCGGGATATCAAATCAAGCAATATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGTTCTGATAACAGCTATATTACAACCCGGGTCATGGGGACATTTGGCTATGTAGCTCCAGAATATGCAAGTACGGGCATGCTTAATGAAAGAAGTGATGCATATAGTTTTGGAATACTTGTTATGGAAATAATCACAGGAAGGAACCCTGTCGATTATAGTCGTCCTCCAGATGAGGTGAACTTGATCGATTGGCTTAAAAGAATGGTCAGTAATCGGAATCCAGAGGGAGTATTGGATCCAAAGCTCTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCGTTACGCTGCGTGGACCCAAATTCTCAGAAGCGGCCAAAAATGGGACATATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGATCTCACATTCAGACAATGTCAAGGAGGGTTTAAATGAGACGCAGGCGACAGAATTAAGTGGCAGCAATGGGGATGAAGTCGATACTCGACAATGA 1497 45.22 MTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISHRPTIPIVSKEIQEIRIDHALAQNQEHKPSRAHFQLDPLPEPEPIPGIERQSLLSLPQEEERVNRIHIEIGKDHRISFPDRLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFSPDNVIGEGGYGIVYHGILEDGTQFAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWIHGDVGPSSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDAYSFGILVMEIITGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNSQKRPKMGHIIHMLEAEEATFKGDRKAGKDPEISHSDNVKEGLNETQATELSGSNGDEVDTRQ 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68027821 68031514 - Hsped.04g12540.1 Hepe04g1254 568392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1254 498 MobiDBLite consensus disorder prediction 128 147 - -
Hepe04g1254 498 MobiDBLite consensus disorder prediction 456 474 - -
Hepe04g1254 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1254 498 MobiDBLite consensus disorder prediction 475 491 - -
Hepe04g1254 498 ProSitePatterns Protein kinases ATP-binding region signature. 184 206 IPR017441 GO:0005524(InterPro)
Hepe04g1254 498 CDD STKc_IRAK 184 450 - -
Hepe04g1254 498 SMART serkin_6 178 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1254 498 SUPERFAMILY Protein kinase-like (PK-like) 159 450 IPR011009 -
Hepe04g1254 498 ProSiteProfiles Protein kinase domain profile. 178 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1254 498 FunFam Probable serine/threonine-protein kinase At1g01540 158 253 - -
Hepe04g1254 498 Pfam Protein kinase domain 181 447 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1254 498 MobiDBLite consensus disorder prediction 456 498 - -
Hepe04g1254 498 FunFam Putative receptor-like serine/threonine-protein kinase 254 464 - -
Hepe04g1254 498 Gene3D Phosphorylase Kinase; domain 1 159 253 - -
Hepe04g1254 498 Gene3D Transferase(Phosphotransferase) domain 1 254 465 - -
Hepe04g1254 498 PANTHER OS01G0323000 PROTEIN 2 477 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1254 Hepe-Chr4:68027821 Hepe05g1969 Hepe-Chr5:70136357 3.94e-201 dispersed
Hepe04g1254 Hepe-Chr4:68027821 Hepe08g1295 Hepe-Chr8:14484578 1.86e-245 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72746 PF00069 Pkinase 1.00E-46 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1254 - - - 0.0