Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1255 ATGGACCAACCCATTCCCAACAAATGCGATCAAAATCCATCTACTTCTTCGATCTGGACTCTCCCCGCCACCGCCGCCGCCGCCTCTTCTCCTCCCGACGAAATCTCTCTGTTTCTGCAGCAGATTTTGCTACGTTCCTCTTCAGCTACTCCACACTCCTCCATCTTCACCGGCAACATTAGAGCTTTCACCCCCCTACCACACAACATCCCCCCTTCTTACGGCCCGCCTAATGCATTGTCTGACGAGATCTCCGCCGTCGATTCTTCACAACAATTCGCTAATTCCTCATCCTCCGGTGTACTACACGATCCCTTTCGCTCTTGTCCCACCCCCGCTCCACTTAATGCGTCTTCTACGTCGATTGGAGCTGGCGACCACTACGACAACGACGACTTTGACTGCGAAAGTGAGGAGGGTCTGGAGGGATTGGTTGAAGAGATGCCTACAAAGCCTAATTCTCGCAGTTCTTCCAAGAGAAGCAGAGCCGCCGAAGTTCATAATCTCTCTGAAAAGAGAAGGAGGAGTAGAATCAATGAGAAAATGAAGGCCCTGCAAAATTTGATCCCTAATTCCAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTTAAGCAGCTTCAGCTTCAAGTTCAGATGCTGTCAATGAGACATGGCTTGAGTTTGCATCCTATGAACTTGACTGGAAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCACTTCCTTCTGACCACCAAGACAGTCCAAACCAGATTTTTCTCAGTTTGCCTGATCAAAAACCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAATAACTAATGTTGAAACTCCATTTGAATTGGCCCCGCCTGTCCAGGCTCATCTAGTCCCCTTTTACTTGACTGAATCCTCCAAGGAGATTTGCAGAGATGTACTGCGAGATCACCAAGTGAATGCTAGCCAATCCAAGACGACTCCCTTCGGTGCGTAA 1014 48.32 MDQPIPNKCDQNPSTSSIWTLPATAAAASSPPDEISLFLQQILLRSSSATPHSSIFTGNIRAFTPLPHNIPPSYGPPNALSDEISAVDSSQQFANSSSSGVLHDPFRSCPTPAPLNASSTSIGAGDHYDNDDFDCESEEGLEGLVEEMPTKPNSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRHGLSLHPMNLTGSLQYLQLSHMRMDFGEENRSLPSDHQDSPNQIFLSLPDQKPASIHPFMSDIGITNVETPFELAPPVQAHLVPFYLTESSKEICRDVLRDHQVNASQSKTTPFGA 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68034645 68036146 - Hsped.04g12550.1 Hepe04g1255 568393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1255 337 CDD bHLH_AtPIF_like 163 224 IPR047265 -
Hepe04g1255 337 MobiDBLite consensus disorder prediction 95 175 - -
Hepe04g1255 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983(InterPro)
Hepe04g1255 337 Coils Coil 201 221 - -
Hepe04g1255 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 222 IPR036638 GO:0046983(InterPro)
Hepe04g1255 337 MobiDBLite consensus disorder prediction 158 175 - -
Hepe04g1255 337 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 32 317 IPR031066 GO:0005634(PANTHER)
Hepe04g1255 337 SMART finulus 168 217 IPR011598 GO:0046983(InterPro)
Hepe04g1255 337 FunFam Basic helix-loop-helix transcription factor 157 220 - -
Hepe04g1255 337 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983(InterPro)
Hepe04g1255 337 Gene3D - 157 222 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1255 Hepe-Chr4:68034645 Hepe08g2224 Hepe-Chr8:61989217 3.55e-25 dispersed
Hepe01g1772 Hepe-Chr1:82828504 Hepe04g1255 Hepe-Chr4:68034645 2.10e-08 wgd
Hepe04g1255 Hepe-Chr4:68034645 Hepe08g1296 Hepe-Chr8:14495901 1.48e-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55425 PF00010 HLH 3.70E-14 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1255 - - - 0.0