Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g1257 | ATGTGGGATCTGAACGATTGTCCCGACCATGAATCGGAAGCGTGTTCGGGCGAAGATGAGAAAGGGAAAAGGGTTGGATCTCTTTCCAATTCTAGTTCTTCCGCTGTGGTTTTGGAAGACGATGGATCCGATGACGACGACCAACCCAGTGAGCCCAACCACATGGTCATGCAAATTGACGCACCCAGCCTCACCTCACACATGGTTACTCGCCAGTTTTTCCCACTTGAAGACACTGAAATCACATCTCAAGCTCCAACTTCCACCTTCCCTCGGGCTCACTGGGTTGGAGTCAAATTTGGACATCCCGATCCTCTCGCCGCACCCACCGCTAATTCCATCAACCCCACCGACCTCTCCCACCCTATTAAGAAAAGCCGCCGTGGTCCAAGGTCCCGCAGCTCTCAGTATCGCGGCGTTACTTTCTACCGGAGAACCGGCCGCTGGGAGTCACATATTTGGGATTGTGGAAAGCAAGTGTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCAGAGGAGTCGAAGCCGACATAAACTTCAGCATCCAAGATTACGAGGAGGATTTAAAACAGATGGGAAATCTAACGAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGGTTCCCCAGAGGAAGCTCCAAGTATAGAGGTGTCACGCTTCACAAGTGTGGAAGATGGGAGGCCAGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTTGATACCGAGATTGAAGCAGCAAGGGCTTATGATAAAGCTGCAATCAAGTGCAATGGCAAAGAAGCTGTCACCAATTTTGATCCCAGCATCTACGATAACGAACTTAATCCCACAACTGATTCAAGTGGGAATTTGGGGGATCACAGTCTTGATTTGAGTTTGGGAAATTCAAGTGCTCCTTCTGCTCCTCCTCTATCCATGGAATTAGCTGAATGGCAACGCAATCAAGGATTTAGGCCTCCTCCTCCACCTCAGCTAGAATCAAGTGGTGGAGGAAACAAAAGTTACAATGGAGAGTTGAGATCAAATACAAATAGGTACCTGGAGAGTGAAACCATGCAGCTCCTAAGCCAAACGCACATTCAATCTCCAGCTTCGTTTGAAATGCAAAGACATCCTCAATTCACCCGACACCCACCTGCTGGAGATCACCACATAGTGCTTCACAATCCCAATTATCAATTTTCGGGCAGCAGTAATGGAGGAGGCCGAATAGGAAGTGATTTATCACTGTCTCTAATAGGAAGTGATTATAATCATCAACTTCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCTCAACCCAGATTACACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTTATGAGACCTTCCTAA | 1446 | 47.44 | MWDLNDCPDHESEACSGEDEKGKRVGSLSNSSSSAVVLEDDGSDDDDQPSEPNHMVMQIDAPSLTSHMVTRQFFPLEDTEITSQAPTSTFPRAHWVGVKFGHPDPLAAPTANSINPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIQDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPTTDSSGNLGDHSLDLSLGNSSAPSAPPLSMELAEWQRNQGFRPPPPPQLESSGGGNKSYNGELRSNTNRYLESETMQLLSQTHIQSPASFEMQRHPQFTRHPPAGDHHIVLHNPNYQFSGSSNGGGRIGSDLSLSLIGSDYNHQLLQSGPSQVLATAAASSGFSTQITPSKNWLHNNGFHCLMRPS | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 68074587 | 68076825 | - | Hsped.04g12570.1 | Hepe04g1257 | 568395 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g1257 | 481 | FunFam | AP2-like ethylene-responsive transcription factor | 227 | 287 | - | - | |
Hepe04g1257 | 481 | ProSiteProfiles | AP2/ERF domain profile. | 136 | 192 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 31 | 331 | - | - | |
Hepe04g1257 | 481 | Gene3D | AP2/ERF domain | 227 | 286 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | Gene3D | AP2/ERF domain | 135 | 194 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | SMART | rav1_2 | 136 | 198 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | SMART | rav1_2 | 228 | 291 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | ProSiteProfiles | AP2/ERF domain profile. | 228 | 285 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | FunFam | AP2-like ethylene-responsive transcription factor | 135 | 194 | - | - | |
Hepe04g1257 | 481 | PRINTS | Ethylene responsive element binding protein signature | 267 | 287 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | PRINTS | Ethylene responsive element binding protein signature | 229 | 240 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | Pfam | AP2 domain | 227 | 277 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | Pfam | AP2 domain | 136 | 184 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | SUPERFAMILY | DNA-binding domain | 135 | 193 | IPR016177 | GO:0003677(InterPro) | |
Hepe04g1257 | 481 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Hepe04g1257 | 481 | MobiDBLite | consensus disorder prediction | 107 | 136 | - | - | |
Hepe04g1257 | 481 | SUPERFAMILY | DNA-binding domain | 227 | 287 | IPR016177 | GO:0003677(InterPro) | |
Hepe04g1257 | 481 | CDD | AP2 | 136 | 191 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g1257 | 481 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Hepe04g1257 | 481 | MobiDBLite | consensus disorder prediction | 284 | 358 | - | - | |
Hepe04g1257 | 481 | MobiDBLite | consensus disorder prediction | 287 | 321 | - | - | |
Hepe04g1257 | 481 | CDD | AP2 | 227 | 287 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g0911 | Hepe-Chr4:63387122 | Hepe04g1257 | Hepe-Chr4:68074587 | 4.85e-103 | dispersed | |
Hepe04g1257 | Hepe-Chr4:68074587 | Hepe08g0848 | Hepe-Chr8:7688552 | 9.84e-112 | dispersed | |
Hepe04g1257 | Hepe-Chr4:68074587 | Hepe10g1430 | Hepe-Chr10:50968401 | 3.26e-142 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55426 | PF00847 | AP2 | 3.20E-10 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g1257 | K09284 | - | csv:101214724 | 632.869 |