Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1257 ATGTGGGATCTGAACGATTGTCCCGACCATGAATCGGAAGCGTGTTCGGGCGAAGATGAGAAAGGGAAAAGGGTTGGATCTCTTTCCAATTCTAGTTCTTCCGCTGTGGTTTTGGAAGACGATGGATCCGATGACGACGACCAACCCAGTGAGCCCAACCACATGGTCATGCAAATTGACGCACCCAGCCTCACCTCACACATGGTTACTCGCCAGTTTTTCCCACTTGAAGACACTGAAATCACATCTCAAGCTCCAACTTCCACCTTCCCTCGGGCTCACTGGGTTGGAGTCAAATTTGGACATCCCGATCCTCTCGCCGCACCCACCGCTAATTCCATCAACCCCACCGACCTCTCCCACCCTATTAAGAAAAGCCGCCGTGGTCCAAGGTCCCGCAGCTCTCAGTATCGCGGCGTTACTTTCTACCGGAGAACCGGCCGCTGGGAGTCACATATTTGGGATTGTGGAAAGCAAGTGTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCAGAGGAGTCGAAGCCGACATAAACTTCAGCATCCAAGATTACGAGGAGGATTTAAAACAGATGGGAAATCTAACGAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGGTTCCCCAGAGGAAGCTCCAAGTATAGAGGTGTCACGCTTCACAAGTGTGGAAGATGGGAGGCCAGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTTGATACCGAGATTGAAGCAGCAAGGGCTTATGATAAAGCTGCAATCAAGTGCAATGGCAAAGAAGCTGTCACCAATTTTGATCCCAGCATCTACGATAACGAACTTAATCCCACAACTGATTCAAGTGGGAATTTGGGGGATCACAGTCTTGATTTGAGTTTGGGAAATTCAAGTGCTCCTTCTGCTCCTCCTCTATCCATGGAATTAGCTGAATGGCAACGCAATCAAGGATTTAGGCCTCCTCCTCCACCTCAGCTAGAATCAAGTGGTGGAGGAAACAAAAGTTACAATGGAGAGTTGAGATCAAATACAAATAGGTACCTGGAGAGTGAAACCATGCAGCTCCTAAGCCAAACGCACATTCAATCTCCAGCTTCGTTTGAAATGCAAAGACATCCTCAATTCACCCGACACCCACCTGCTGGAGATCACCACATAGTGCTTCACAATCCCAATTATCAATTTTCGGGCAGCAGTAATGGAGGAGGCCGAATAGGAAGTGATTTATCACTGTCTCTAATAGGAAGTGATTATAATCATCAACTTCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCTCAACCCAGATTACACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTTATGAGACCTTCCTAA 1446 47.44 MWDLNDCPDHESEACSGEDEKGKRVGSLSNSSSSAVVLEDDGSDDDDQPSEPNHMVMQIDAPSLTSHMVTRQFFPLEDTEITSQAPTSTFPRAHWVGVKFGHPDPLAAPTANSINPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIQDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPTTDSSGNLGDHSLDLSLGNSSAPSAPPLSMELAEWQRNQGFRPPPPPQLESSGGGNKSYNGELRSNTNRYLESETMQLLSQTHIQSPASFEMQRHPQFTRHPPAGDHHIVLHNPNYQFSGSSNGGGRIGSDLSLSLIGSDYNHQLLQSGPSQVLATAAASSGFSTQITPSKNWLHNNGFHCLMRPS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68074587 68076825 - Hsped.04g12570.1 Hepe04g1257 568395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1257 481 FunFam AP2-like ethylene-responsive transcription factor 227 287 - -
Hepe04g1257 481 ProSiteProfiles AP2/ERF domain profile. 136 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 31 331 - -
Hepe04g1257 481 Gene3D AP2/ERF domain 227 286 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 Gene3D AP2/ERF domain 135 194 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 SMART rav1_2 136 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 SMART rav1_2 228 291 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 ProSiteProfiles AP2/ERF domain profile. 228 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 FunFam AP2-like ethylene-responsive transcription factor 135 194 - -
Hepe04g1257 481 PRINTS Ethylene responsive element binding protein signature 267 287 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 PRINTS Ethylene responsive element binding protein signature 229 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 Pfam AP2 domain 227 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 Pfam AP2 domain 136 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677(InterPro)
Hepe04g1257 481 MobiDBLite consensus disorder prediction 1 54 - -
Hepe04g1257 481 MobiDBLite consensus disorder prediction 107 136 - -
Hepe04g1257 481 SUPERFAMILY DNA-binding domain 227 287 IPR016177 GO:0003677(InterPro)
Hepe04g1257 481 CDD AP2 136 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1257 481 MobiDBLite consensus disorder prediction 1 25 - -
Hepe04g1257 481 MobiDBLite consensus disorder prediction 284 358 - -
Hepe04g1257 481 MobiDBLite consensus disorder prediction 287 321 - -
Hepe04g1257 481 CDD AP2 227 287 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0911 Hepe-Chr4:63387122 Hepe04g1257 Hepe-Chr4:68074587 4.85e-103 dispersed
Hepe04g1257 Hepe-Chr4:68074587 Hepe08g0848 Hepe-Chr8:7688552 9.84e-112 dispersed
Hepe04g1257 Hepe-Chr4:68074587 Hepe10g1430 Hepe-Chr10:50968401 3.26e-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55426 PF00847 AP2 3.20E-10 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1257 K09284 - csv:101214724 632.869