Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1259 ATGGACGACGGCGGAGGAGGCGACTGCGATGGTACCAGAAAAAGAGGGCTCGACAATAATAATAATAATAATACTAATCAGAGGCCGTACAAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTCGAGAGCCCAACAAGCGCTCTAGGATTTGGCTCGGTTCTTACTCTTCTCCCGTCGCCGCCGCCAGGGCATACGATACCGCCGTTTTCTACCTCAGAGGCCCTTCTGCCCGGCTTAATTTTCCCGAGTTGTTAGCCGGGGAAGGCCGCGCCGGAATTACCCTCGACATGTCCGCCGCTTCTATACGGAAGAAAGCCACCGAGGTTGGGGCTCGAGTCGACGCTCTCGAGACTTCCTTAGCTCATCACCACAATCGGACACTTCTTCCACACGCATCGGCGTCTCCGCCGCCACAGATTAAAGGCTTCTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGATCAAGATGAAGAACCCGAAGGGGAATTCGAATGGGAGAGACACTGA 528 54.17 MDDGGGGDCDGTRKRGLDNNNNNNTNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRAGITLDMSAASIRKKATEVGARVDALETSLAHHHNRTLLPHASASPPPQIKGFLDRVDLNKLPDPEDQDEEPEGEFEWERH 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68112480 68115898 - Hsped.04g12590.1 Hepe04g1259 568397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1259 175 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677(InterPro)
Hepe04g1259 175 Pfam AP2 domain 30 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1259 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 21 165 - -
Hepe04g1259 175 SMART rav1_2 29 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1259 175 CDD AP2 30 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1259 175 MobiDBLite consensus disorder prediction 152 175 - -
Hepe04g1259 175 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1259 175 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1259 175 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1259 175 MobiDBLite consensus disorder prediction 1 15 - -
Hepe04g1259 175 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1259 175 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Hepe04g1259 175 MobiDBLite consensus disorder prediction 1 30 - -
Hepe04g1259 175 MobiDBLite consensus disorder prediction 16 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2293 Hepe-Chr2:66230616 Hepe04g1259 Hepe-Chr4:68112480 7.49e-25 dispersed
Hepe02g3481 Hepe-Chr2:84085558 Hepe04g1259 Hepe-Chr4:68112480 8.19e-24 dispersed
Hepe04g1259 Hepe-Chr4:68112480 Hepe09g0955 Hepe-Chr9:9639426 1.50e-23 dispersed
Hepe10g1428 Hepe-Chr10:50939558 Hepe04g1259 Hepe-Chr4:68112480 3.49e-48 transposed
Hepe01g1785 Hepe-Chr1:82925766 Hepe04g1259 Hepe-Chr4:68112480 6.50e-52 wgd
Hepe04g1259 Hepe-Chr4:68112480 Hepe08g1300 Hepe-Chr8:14624379 1.77e-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55427 PF00847 AP2 2.30E-11 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1259 K09286 - csv:101214481 208.379