Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1261 ATGAACCCCAATCCCCCCACATTTCTCCTTTCCTTTTCATTTCTCTTTTCTGTTCTTCTCTTTTCTCTCTCCGCCTCTGGATTTGCCTTTCAAATTCCGCCGCCGTCGCTTCTCCCTCCGGAAGACTTGCTGCTGCCGTCCGACGCCGTTTCTCTTCTTTCGTTCAAGTCCAAAGCCGACTTGAACAACAAGCTTCTTTACACTCTCAATGAGCGCTTTGATTACTGTCAATGGCAGGGCGTCAAGTGCGTCCAGGGTCGTGTTGTTCGTCTTGTTCTCCAATCGTTTGGTCTCCGAGGGATATTGGCTCCTAACACAGTGTCTAAGCTCGACCAGCTTCGGATCCTCAGCCTTCATAATAACTCGCTCGAGGGACCCATTCCTGACCTATCCGGACTCTTCAATCTTAAATCTCTGTTCCTTGGCCGAAACTCCTTCGTCGGGGCTTTTCCGCCGTCGATTCTCACTCTTCACCGGCTTCAGACTCTCGATCTTTCCTATAACATCTTCACTGGTCCACTTCCGGTGAGGCTTTCCTCATTGGACCGGCTCATTACGCTCCGGCTCGAATGGAATGCTTTCAATGGAAGTATGCCGCCGTTAAATCAGTCGTTTCTTGAGGTCTTCAATGTCTCGGGGAACAATCTAACCGGCCAAATTCCGGTGACTCCCACTCTCTCGCGTTTCAACACGTCGTCGTTTTTCTGGAACCCAGATCTCTGCGGCGAGATCGTCAATAAAGCATGCCACTCACCCGCTCCGTTCTTTGAAGCTTCCAATGCCACTCCACCATCTCTCCCGTCCGTCCAAAACGTACAGTCACAGGACGTTCTTCTCTCTCCAGTCTCTCATGTCAAGCACAAGGAAACCGGTATGATTCTGGGGCTTTCAGTCGGCGCCGCAGTTTTAGTAGCAGGTCTTTTATGTTTCTATGTAGCTGCCAGAACCCAAAGAAGACAAACGGCGTCGAAGCCGGCAATGGCGCCGTTCGAAACCGAAATTGATTTTTCCACAGCTTCCGCAATCGACGACCGAGTTAACGGGAAGGGCGAATTTCAAGCCAAATTGAAAGAAATTGAAGCAATGCCAAAAGCCCAGAAGAGTGGTAATCTTATATTTTGTGAAGGGGAGACAGAGTTATTCAGCTTAGAGCAGTTGATGAGAGCTTCGGCGGAGCTGCTCGGAAGAGGCACAATGGGAACTACATACAAAGCCGTGCTCTGCAACCAGCTAATCGTGACGGTGAAGCGCCTCGACGCTACAAAGACTGCCATGACGAGCAGCGAAGTGTTCGACCGGCATTTGGGAGCAGTGGGTGCGCTTCGTCATCCCAATTTGGTAGCAGTCAGGGCATACTTTCAAGCCAGGGGCGAGAGATTAGTGGTCTACGATTACCAACCTAACGGCAGTCTTTACAACCTCATTCACGGTTCAAGATCAGCAAGGGCTAAGCCTCTGCACTGGACATCATGCTTGAAGATTGCAGAAGATTTAGCTCAGGGCATTGCTTATATACATCAAGCTTCTAAGTTAATCCATGGGAACTTGAAGTCTTCTAATGTTCTTCTAGGGGCAGACTTTGAGGCCTGTCTCACAGACTATTGCCTTTCTGCTCTGGCAGAGACCTCTGAAGATGCAGATTCTTCACGCTACCAAGCCCCGGAAACTCGAAAGTCCAGTCGCAATGCCACCCACAAGAGCGATGTGTATGCCTTTGGCGTGCTCTTGCTGGAGCTTTTGACAGGAAGTCATCCTTCACACCATCCATTTCTTGAGCCAACTGATATGCCAGAATGGGTAAGGGCAGTTAGGGAAGATGATGGTGGGGATAGTAACCAACTTGGAATGCTTACCGAGGTGGCTAGCATCTGTAGTACTACATCCCCTGAACAGAGGCCGGCAATGTGGCAAGTTTTGAAAATGATTCTGGAGATTAAAGAGAGTGTCATGGTAGAGGACAGTGAATCTAGCGGCTTTTAA 1980 49.55 MNPNPPTFLLSFSFLFSVLLFSLSASGFAFQIPPPSLLPPEDLLLPSDAVSLLSFKSKADLNNKLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGILAPNTVSKLDQLRILSLHNNSLEGPIPDLSGLFNLKSLFLGRNSFVGAFPPSILTLHRLQTLDLSYNIFTGPLPVRLSSLDRLITLRLEWNAFNGSMPPLNQSFLEVFNVSGNNLTGQIPVTPTLSRFNTSSFFWNPDLCGEIVNKACHSPAPFFEASNATPPSLPSVQNVQSQDVLLSPVSHVKHKETGMILGLSVGAAVLVAGLLCFYVAARTQRRQTASKPAMAPFETEIDFSTASAIDDRVNGKGEFQAKLKEIEAMPKAQKSGNLIFCEGETELFSLEQLMRASAELLGRGTMGTTYKAVLCNQLIVTVKRLDATKTAMTSSEVFDRHLGAVGALRHPNLVAVRAYFQARGERLVVYDYQPNGSLYNLIHGSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASKLIHGNLKSSNVLLGADFEACLTDYCLSALAETSEDADSSRYQAPETRKSSRNATHKSDVYAFGVLLLELLTGSHPSHHPFLEPTDMPEWVRAVREDDGGDSNQLGMLTEVASICSTTSPEQRPAMWQVLKMILEIKESVMVEDSESSGF 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68140587 68144344 - Hsped.04g12610.1 Hepe04g1261 568399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1261 659 SUPERFAMILY Protein kinase-like (PK-like) 392 647 IPR011009 -
Hepe04g1261 659 FunFam Leucine-rich repeat receptor-like protein kinase 159 251 - -
Hepe04g1261 659 FunFam Probable inactive receptor kinase At5g67200 47 157 - -
Hepe04g1261 659 ProSiteProfiles Protein kinase domain profile. 388 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1261 659 Gene3D Transferase(Phosphotransferase) domain 1 467 657 - -
Hepe04g1261 659 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 47 647 IPR046959 -
Hepe04g1261 659 ProSiteProfiles Leucine-rich repeat profile. 112 134 IPR001611 GO:0005515(InterPro)
Hepe04g1261 659 Gene3D Ribonuclease Inhibitor 46 202 IPR032675 -
Hepe04g1261 659 Pfam Leucine Rich Repeat 159 181 IPR001611 GO:0005515(InterPro)
Hepe04g1261 659 Pfam Leucine Rich Repeat 112 129 IPR001611 GO:0005515(InterPro)
Hepe04g1261 659 SUPERFAMILY L domain-like 49 242 - -
Hepe04g1261 659 Gene3D Phosphorylase Kinase; domain 1 352 465 - -
Hepe04g1261 659 Pfam Protein tyrosine and serine/threonine kinase 392 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1261 659 Gene3D Ribonuclease Inhibitor 203 252 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0428 Hepe-Chr1:57757642 Hepe04g1261 Hepe-Chr4:68140587 4.97e-127 dispersed
Hepe04g1261 Hepe-Chr4:68140587 Hepe08g2570 Hepe-Chr8:67362052 6.68e-80 dispersed
Hepe04g1261 Hepe-Chr4:68140587 Hepe08g0676 Hepe-Chr8:6049883 1.70e-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72747 PF07714 PK_Tyr_Ser-Thr 1.30E-29 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1261 - - - 0.0