Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1263 ATGGCCGTCGAGGTCTACCCACGACTCTCCCTCACCGAGAAGATGGAAGCCAACGCCGTTCAAGAAGCAGCTTCCGGCCTCGAAAGCGTCGAGAAACTCATCCGATTGCTCTCCAATTCCCAATCCACCTCCTTTCCCCCTTCTATTCAATCCCCTAATTCCACTCACTCCTCTAATTCAGATTTCCCCTCCGACTGCCGCGCCGCCGCCGATGCTGCCGTCTCCAAGTTCAAAAAGGTCATTTCTCTTCTGGGTCGGAGTCGGGTCGGCCATGCCCGCTTCAGAAGAGCTCCTCTCCCTCTTCCTCATACCCCCCAAGTCCACTACGCCACTCCCATCCAACAGATCCCCGCCGTCGACCTTCATAACAAACAGCCTCCCACTCTCAATTTCTCCTATTCCTCTGCCCATAACTCGTTCGTCTCCTCGTTGACCGGCGACGGCGACGGCGACACCAAGCAACCGTCCTCCTCGTCGGCTTTTCAGATTACCAACATGTCCCAAATCTCCTCCGCCGGAAAACCACCTCTCCTCAAGAGGAAGTGTAGCTCCGAAAACTTGGGATCCGGCAAGTGCGGCGCTGCTTCTTCCTCCGGCCGATGCCACTGTTCCAAGAAGAGGAAACTGAAGGTGAAGAGAGTTGTGAGAGTTCCGGCGATAAGCTTGAAATTGGCAGATATTCCACCGGACGATTATTCATGGAGAAAATATGGTCAAAAGCCCATTAAAGGGTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCAGGAAACACGTAGAACGGGCCGTAGACGATCCGGCTATGCTAGTGGTCACATACGAAGGAGAACATAATCACACCCACCTCGCTCTACCCGAAACCACCAATCTCATTCTTGAGTCTTCCTAG 909 53.8 MAVEVYPRLSLTEKMEANAVQEAASGLESVEKLIRLLSNSQSTSFPPSIQSPNSTHSSNSDFPSDCRAAADAAVSKFKKVISLLGRSRVGHARFRRAPLPLPHTPQVHYATPIQQIPAVDLHNKQPPTLNFSYSSAHNSFVSSLTGDGDGDTKQPSSSSAFQITNMSQISSAGKPPLLKRKCSSENLGSGKCGAASSSGRCHCSKKRKLKVKRVVRVPAISLKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTHLALPETTNLILESS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68169831 68171190 - Hsped.04g12630.1 Hepe04g1263 568401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1263 302 Pfam WRKY DNA -binding domain 230 286 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1263 302 SMART WRKY_cls 228 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1263 302 MobiDBLite consensus disorder prediction 142 162 - -
Hepe04g1263 302 Pfam Plant zinc cluster domain 179 226 IPR018872 -
Hepe04g1263 302 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 290 IPR044810 GO:0003700(InterPro)
Hepe04g1263 302 MobiDBLite consensus disorder prediction 42 63 - -
Hepe04g1263 302 FunFam WRKY transcription factor 65 212 289 - -
Hepe04g1263 302 Gene3D WRKY domain 219 288 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1263 302 ProSiteProfiles WRKY domain profile. 223 286 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1263 302 SUPERFAMILY WRKY DNA-binding domain 226 287 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2055 Hepe-Chr3:78089943 Hepe04g1263 Hepe-Chr4:68169831 3.97e-55 dispersed
Hepe04g1263 Hepe-Chr4:68169831 Hepe06g1960 Hepe-Chr6:70850247 5.87e-53 dispersed
Hepe09g0437 Hepe-Chr9:3944685 Hepe04g1263 Hepe-Chr4:68169831 4.86e-68 transposed
Hepe01g1792 Hepe-Chr1:82975299 Hepe04g1263 Hepe-Chr4:68169831 1.89e-75 wgd
Hepe04g1263 Hepe-Chr4:68169831 Hepe08g1152 Hepe-Chr8:11676588 2.49e-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55428 PF03106 WRKY 3.80E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1263 - - - 0.0