Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1268 ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGTCGACAATTCAGCTCCAACTGTCGAGACGCAAAATAGTAAAGGAGACCAATTGACATCTATTTTATCTACGTCTGGCATATCATCTTGGGCTAGGAGATTTAGAAATCCACAATCATCTGAAGCAGCAGAAAATGACTCTAAGGCAGGAAATGCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCTCCTGTACGAGACGATGGTATTGCAGATACCAAATCAGCAACGCAATCTGGTGTTTTCGAATCGATCACAAAAGGGTTAGTTGACACATCTCAGAATGCAGTTAAGGCTATGCAGGTAAAGGCACGCCATATGGTCTCTCAAAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTTGGATTCCTTGAGGGATTTTATAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGACGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCACCTCATAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTATTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCAATTGACTATTTTAATCAGAAAAGATGCGTGGATGGAAAGGCTTTGGTTCTTCCTAGTCAGATTAGGTATGTCAAGTATTATGAGCGCATTCTAACACATTTCAACGGAAATACTCCACCTGGACGGAGGTGCATGCTGAGAGGTTTCCGGCTTCACAACTGCCCGTACTGGGTTAGGCCATCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTGGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGAGACTTCAAGATTCATTTTCATGACCGGCATGGAGATTTTTACTGTTGGTTAAATACAACAATGACACAAAACAAGGTATTATTAAGTGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACTCCTGGACTCCAGGTCGAAATTGTGATGATAGACTATGATGGTACTTTACCAACACGATTGAAAACTGGTTCTGCTGGCAAAGGATCTGATCGTCGCTCCCATGATCGGGGATCAGATCATGAAGCAGCACAATCCAGCAAAAATCAAATTCCCGAAGATGAAGAAAATGATGACAATGTATTCTCTGATAGTGATGAAGAAAATGGCGACACAAAAACCAGTCTAGCCCAATCAACTTCTGGAACTGCAGGAGCAGCTGACCATTCATCAACAACAATTGCTTCTGAAAGAATTGGGAGTTTAGCTCATTTGTCACTCGGGAATGAGAAAAACACACAAACAAGTGTTTCAACAGAACTAAACTTTGACGGTATGATACAATCGCCAGGCCTTGAGACCCCAAATTTGGATTCATTAAGAGCAAGTGACTTCAAGGCAATAGCAGCCGATGCGTCAGTTTTCACTTTTGGGGATGAAGAAGACTTTGATAGTGAATAG 1806 40.42 MDNGTSNSSTQSAVDNSAPTVETQNSKGDQLTSILSTSGISSWARRFRNPQSSEAAENDSKAGNAGMSAIARFSSGFGLRIPSMSPVRDDGIADTKSATQSGVFESITKGLVDTSQNAVKAMQVKARHMVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVIHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYFNQKRCVDGKALVLPSQIRYVKYYERILTHFNGNTPPGRRCMLRGFRLHNCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTQNKVLLSDTDLDGFDKRKLPTPGLQVEIVMIDYDGTLPTRLKTGSAGKGSDRRSHDRGSDHEAAQSSKNQIPEDEENDDNVFSDSDEENGDTKTSLAQSTSGTAGAADHSSTTIASERIGSLAHLSLGNEKNTQTSVSTELNFDGMIQSPGLETPNLDSLRASDFKAIAADASVFTFGDEEDFDSE 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68209864 68214795 + Hsped.04g12680.1 Hepe04g1268 568406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1268 601 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Hepe04g1268 601 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Hepe04g1268 601 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Hepe04g1268 601 MobiDBLite consensus disorder prediction 1 34 - -
Hepe04g1268 601 MobiDBLite consensus disorder prediction 461 490 - -
Hepe04g1268 601 SMART PTEN_C2_2 319 447 IPR014020 -
Hepe04g1268 601 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Hepe04g1268 601 Pfam PTEN2, C2 domain 321 449 - -
Hepe04g1268 601 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Hepe04g1268 601 CDD PTP_PTEN 145 310 IPR045101 GO:0016791(InterPro)
Hepe04g1268 601 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Hepe04g1268 601 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Hepe04g1268 601 MobiDBLite consensus disorder prediction 507 527 - -
Hepe04g1268 601 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 522 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Hepe04g1268 601 MobiDBLite consensus disorder prediction 454 527 - -
Hepe04g1268 601 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1268 K01110 - - csv:101213277 1042.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2078 Hepe-Chr2:51911721 Hepe04g1268 Hepe-Chr4:68209864 3.05e-43 dispersed
Hepe02g0602 Hepe-Chr2:6253950 Hepe04g1268 Hepe-Chr4:68209864 6.85e-240 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1015 . . . Bda10g00247 . . . Bma15g00872 . Cmo07g00697 . . . . Sed14g0873 Cpe19g00640 . Bhi03g00963 Tan03g1590 Cmetu04g1134 . Hepe04g1268 . . Cla01g01668 Cam01g1749 Cec04g1397 Cco04g1461 Clacu01g1774 Cmu01g1654 Cre04g1330 . . Cone8ag0143 Cone12ag0143 Lsi01g00954 Csa06g02964 . Cme08g00594 . . . . . . . . . . . . Cma07g00685 . Car07g00682 . . . . . . . . . . . . . . . . . . Chy02g00892 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe01g0559 . 79 386 Protein tyrosine phosphatase (PTP) family AT1G71860 66.5 6.6e-120 427.6
Hepe09g0013 . 1 864 Protein tyrosine phosphatase (PTP) family AT5G23720 62.8 5.1e-300 1027.3
Hepe03g0164 . 97 236 Protein tyrosine phosphatase (PTP) family AT3G06110 51.1 1.2e-37 153.3
Hepe02g0068 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 3.0e-71 265.0
Hepe01g1069 . 92 372 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.1e-112 403.3
Hepe01g0659 . 4 278 Protein tyrosine phosphatase (PTP) family AT3G10940 65.8 5.3e-107 384.4
Hepe02g1823 . 14 462 Protein tyrosine phosphatase (PTP) family AT3G01510 73.7 1.9e-204 708.8
Hepe08g0587 . 10 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 7.0e-74 274.2
Hepe02g0073 . 6 233 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 3.0e-72 268.9
Hepe09g1309 . 14 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.8 4.4e-52 201.8
Hepe06g1113 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 6.1e-102 367.9
Hepe08g2635 . 10 229 Protein tyrosine phosphatase (PTP) family AT2G35680 60.1 1.9e-79 293.1
Hepe08g2635 . 27 216 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 7.7e-46 180.6
Hepe08g0587 . 43 211 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 3.4e-76 281.6
Hepe02g0073 . 36 234 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.1e-69 260.0
Hepe09g1309 . 12 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.7 6.7e-56 214.2
Hepe09g1309 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 7.5e-79 290.4
Hepe08g0587 . 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 59.9 7.5e-55 210.7
Hepe01g0838 . 1 184 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 2.2e-62 237.7
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G19420 63.4 1.4e-216 749.6
Hepe04g1268 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 61.7 5.7e-199 691.0
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe08g0239 . 62 244 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.7e-67 253.1
Hepe06g1037 . 23 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.3 2.3e-108 389.0
Hepe04g0778 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 69.0 6.1e-279 956.8
Hepe04g0778 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.1e-253 872.8
Hepe04g0778 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 55.5 1.4e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83