Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1304 ATGATGCAATTCAGCCAGACTCCCCCACGGTTGCACCAAACCACCGCCACCACTAGGATTATTTCTTCTTCATTTGATCATCCAGATATCACTCCTTCAATAATGAATAATAAAACAACGACGACAACAACAACCACGACGGCTAGACGCCCATGGCCTGGTCATGGTCATGCTCATGCTGGATTATTATTCCCTTTTTCCTCAAAGGCAACTTTGGGAAGTTGTTTGGGTGATGCCAATTGCATGGAACAGTTATTAATTCACTGTGCCAACGCCATTGAATCCAACGACGCCACTCTTGCCCAACAAATCCTTTGGGTCCTAAACAACATTGCCCCTCCCGACGGCGACTCGAATCAACGCCTCACTTCCGCCTTCCTACGCGCTCTCGTCACACGCGCCACCAACACCGGCAGCTGCAAGATCCTCACCCCCATCACCTCCTCCACTTCCTCCCTCACCACCCATACCTTCTCCCTCATGGACCTCGCCGCCTTCGTCGATTTAACCCCTTGGCACCGCTTTGGCTTCACCGCTGCCAATGCCGCCATTCTCGACGCTATCGACGGTTACTCATCCGTTCACATAATCGACTTCAGCCTTATGCATTGCATGCAAATCCCCACTCTCATCGACGCCATCGCTACTCGCTTCGAGGTCCCTCCTCTACTCAAACTCACCACCGTCGCCTCCGTAAAAGACGCGCCGCCCGTGCTGGACCTGTCGTACGACGAATTAGGTGCGAAATTGATGAACTTCGCGAGGTCTAAAAACGTGAGTATGGAATTTAGAGTGGTCCCGTCTTGTTACACAGATGGTTACGCCAACTTAATCGAACAAATCCGTGTGCAACATTTAATTTACGGAGCCGAAAGTCACGAAGCGCTCGTTTTCAACTGCCACATGATGCTCCATTACATCCCCGAAGAATCGCAATCTCCCAATTCCAATTACGACATGTCGTCGTGTGCTTCAATTCGATCCATTTTTCTGAAGGAAATCCGCAGCTTAGATCCAACGGTGGTGATTCTAATCGACGAAGATGCGGATTTGACGTCGAGTAAATTGGTTAGCCGATTGAGATCGGCGTTTAATTACCTGTGGATTCCGTACGACTCGATGGATTCGTTTGTGCCTCGGAGCAGCAAGCAGAGGGAATGGTACGAGGCCGACATTTGCTGGAAGATTGAGAATGTGATTGCTCACGAAGGGATTCAAAGAGTGGAGAGATTGGAGCCAAAGGGGCGCTGGATTCAACGGATGGTCAACGCCAAATTCCGAGGGGTTCCGTTCGGAGACGACGCCGTTTCGGAGGTGAAGACGATGCTGGACGAGCATGCAGCCGGATGGGGGCTCAAGAAGGATGATGACCACCTCCTCCTCACTTGGAAAGGCCACCACGTCGTTTTCGCCACCGCTTGGGTACCTTCATAA 1434 51.12 MMQFSQTPPRLHQTTATTRIISSSFDHPDITPSIMNNKTTTTTTTTTARRPWPGHGHAHAGLLFPFSSKATLGSCLGDANCMEQLLIHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNTGSCKILTPITSSTSSLTTHTFSLMDLAAFVDLTPWHRFGFTAANAAILDAIDGYSSVHIIDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVASVKDAPPVLDLSYDELGAKLMNFARSKNVSMEFRVVPSCYTDGYANLIEQIRVQHLIYGAESHEALVFNCHMMLHYIPEESQSPNSNYDMSSCASIRSIFLKEIRSLDPTVVILIDEDADLTSSKLVSRLRSAFNYLWIPYDSMDSFVPRSSKQREWYEADICWKIENVIAHEGIQRVERLEPKGRWIQRMVNAKFRGVPFGDDAVSEVKTMLDEHAAGWGLKKDDDHLLLTWKGHHVVFATAWVPS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68641051 68642500 - Hsped.04g13040.1 Hepe04g1304 568442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1304 477 Pfam GRAS domain family 82 474 IPR005202 -
Hepe04g1304 477 MobiDBLite consensus disorder prediction 1 50 - -
Hepe04g1304 477 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 67 474 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe04g1304 477 MobiDBLite consensus disorder prediction 1 52 - -
Hepe04g1304 477 ProSiteProfiles GRAS family profile. 73 475 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1304 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1304 Hepe-Chr4:68641051 Hepe04g1315 Hepe-Chr4:68769049 1.96e-50 dispersed
Hepe04g1304 Hepe-Chr4:68641051 Hepe02g0199 Hepe-Chr2:2036986 2.71e-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g949 . Blo16g00358 . . . Bpe15g00304 . . . Cmo07g00670 . . . . Sed14g0906 Cpe19g00662 . Bhi03g01023 Tan03g1648 Cmetu08g0772 . Hepe04g1304 . . Cla01g01702 Cam01g1789 Cec04g1435 Cco04g1500 Clacu01g1813 Cmu01g1692 Cre04g1365 . . . Cone12ag0161 Lsi01g00910 Csa06g03008 . Cme08g00635 . . Bda11g01470 . Bpe13g00121 . Bma03g01138 . . . . Cma03g00933 . Car03g00840 . Cpe10g00472 . . . . . . . . . . . . . . . . . Chy02g00853 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g0168 . 42 749 GRAS Transcription Factor Family AT2G37650 53.2 4.3e-198 688.3
Hepe03g0643 . 289 736 GRAS Transcription Factor Family AT2G45160 54.3 6.8e-110 395.2
Hepe10g1249 . 307 681 GRAS Transcription Factor Family AT3G46600 55.5 7.1e-124 441.4
Hepe05g0168 . 285 749 GRAS Transcription Factor Family AT3G46600 50.3 8.7e-122 434.5
Hepe04g1304 . 66 476 GRAS Transcription Factor Family AT3G49950 61.1 3.4e-139 491.9
Hepe06g1136 . 423 795 GRAS Transcription Factor Family AT3G60630 50.9 2.5e-93 340.1
Hepe07g0684 . 83 531 GRAS Transcription Factor Family AT4G36710 53.6 1.5e-125 446.8
Hepe07g0886 . 68 446 GRAS Transcription Factor Family AT5G41920 69.9 1.4e-148 523.1
Hepe04g0646 . 443 835 GRAS Transcription Factor Family AT5G41920 55.5 2.6e-115 412.5
Hepe04g1503 . 1 613 GRAS Transcription Factor Family AT5G66770 56.6 5.0e-176 614.8
Hepe07g0671 . 1 587 GRAS Transcription Factor Family AT5G66770 56.2 6.3e-171 597.8
Hepe08g0397 . 57 545 GRAS Transcription Factor Family AT1G50600 58.6 5.3e-161 564.7
Hepe06g0540 . 46 545 GRAS Transcription Factor Family AT1G50600 56.9 6.5e-159 557.8
Hepe04g1711 . 111 549 GRAS Transcription Factor Family AT1G50600 56.4 4.4e-139 491.9
Hepe01g1320 . 213 583 GRAS Transcription Factor Family AT1G50600 62.3 8.5e-135 477.6
Hepe10g1981 . 193 573 GRAS Transcription Factor Family AT1G50600 50.4 1.4e-108 390.6
Hepe02g2646 . 40 574 GRAS Transcription Factor Family AT1G14920 69.1 1.1e-209 726.5
Hepe02g2393 . 54 577 GRAS Transcription Factor Family AT1G14920 62.2 5.2e-180 627.9
Hepe02g0993 . 29 544 GRAS Transcription Factor Family AT1G14920 58.1 6.8e-164 574.3
Hepe02g2393 . 54 578 GRAS Transcription Factor Family AT1G66350 62.5 2.0e-176 615.9
Hepe02g2646 . 42 572 GRAS Transcription Factor Family AT1G66350 59.6 2.5e-171 599.0
Hepe02g0993 . 1 548 GRAS Transcription Factor Family AT1G66350 57.4 7.4e-168 587.4
Hepe08g0779 . 222 746 GRAS Transcription Factor Family AT1G07520 51.5 2.1e-141 499.6
Hepe08g0397 . 99 545 GRAS Transcription Factor Family AT5G48150 72.4 1.2e-191 666.4
Hepe06g0540 . 17 545 GRAS Transcription Factor Family AT5G48150 58.2 1.4e-171 599.7
Hepe04g1711 . 16 549 GRAS Transcription Factor Family AT5G48150 51.5 1.2e-146 516.9
Hepe10g1981 . 182 573 GRAS Transcription Factor Family AT5G48150 53.8 1.5e-120 430.3
Hepe10g1983 . 1 144 GRAS Transcription Factor Family AT5G48150 53.5 1.7e-44 177.6
Hepe02g2646 . 44 571 GRAS Transcription Factor Family AT2G01570 70.0 2.1e-214 742.3
Hepe02g2393 . 56 575 GRAS Transcription Factor Family AT2G01570 62.5 3.0e-181 632.1
Hepe02g0993 . 28 544 GRAS Transcription Factor Family AT2G01570 60.0 7.0e-170 594.3
Hepe02g2393 . 54 578 GRAS Transcription Factor Family AT1G66350 62.5 2.0e-176 615.9
Hepe02g2646 . 42 572 GRAS Transcription Factor Family AT1G66350 59.6 2.5e-171 599.0
Hepe02g0993 . 1 548 GRAS Transcription Factor Family AT1G66350 57.4 7.4e-168 587.4
Hepe02g2393 . 56 575 GRAS Transcription Factor Family AT3G03450 61.8 4.4e-174 608.2
Hepe02g2646 . 44 571 GRAS Transcription Factor Family AT3G03450 60.0 1.6e-171 599.7
Hepe02g0993 . 28 544 GRAS Transcription Factor Family AT3G03450 60.6 3.7e-165 578.6
Hepe02g2393 . 55 576 GRAS Transcription Factor Family AT5G17490 59.0 5.3e-161 564.7
Hepe02g2646 . 40 571 GRAS Transcription Factor Family AT5G17490 57.6 1.2e-157 553.5
Hepe02g0993 . 29 550 GRAS Transcription Factor Family AT5G17490 55.6 1.7e-146 516.5
Hepe10g1981 . 1 573 GRAS Transcription Factor Family AT1G21450 57.3 7.5e-172 600.9
Hepe06g0540 . 170 545 GRAS Transcription Factor Family AT1G21450 53.8 3.8e-115 412.5
Hepe10g1983 . 1 144 GRAS Transcription Factor Family AT1G21450 73.8 3.0e-59 226.9
Hepe05g0168 . 301 749 GRAS Transcription Factor Family AT5G59450 50.4 5.1e-123 438.7
Hepe04g1711 . 56 549 GRAS Transcription Factor Family AT4G17230 61.4 2.0e-168 589.3
Hepe06g0540 . 50 545 GRAS Transcription Factor Family AT4G17230 51.7 1.7e-135 479.9
Hepe01g1320 . 209 583 GRAS Transcription Factor Family AT4G17230 51.5 1.1e-108 391.0
Hepe08g0397 . 134 545 GRAS Transcription Factor Family AT2G04890 67.6 1.9e-161 565.8
Hepe06g0540 . 171 545 GRAS Transcription Factor Family AT2G04890 64.5 6.7e-143 504.2
Hepe01g1320 . 213 583 GRAS Transcription Factor Family AT2G04890 59.6 2.0e-126 449.5
Hepe04g1711 . 169 549 GRAS Transcription Factor Family AT2G04890 58.0 3.8e-122 435.3
Hepe09g1143 . 1 472 GRAS Transcription Factor Family AT1G50420 65.8 2.8e-177 618.6
Hepe01g1006 . 1 462 GRAS Transcription Factor Family AT1G50420 60.8 1.2e-156 550.1
Hepe06g1136 . 432 795 GRAS Transcription Factor Family AT4G00150 55.7 7.5e-105 378.3
Hepe07g0671 . 1 587 GRAS Transcription Factor Family AT3G50650 57.3 3.9e-151 531.9
Hepe04g0646 . 180 833 GRAS Transcription Factor Family AT3G54220 62.5 4.4e-205 711.4
Hepe07g0886 . 82 447 GRAS Transcription Factor Family AT3G54220 62.8 3.1e-134 476.1
Hepe04g1315 . 74 499 GRAS Transcription Factor Family AT4G37650 65.3 1.8e-161 566.2
Hepe10g1414 . 143 531 GRAS Transcription Factor Family AT4G37650 58.4 2.8e-133 472.6
Hepe03g1077 . 65 459 GRAS Transcription Factor Family AT4G37650 51.2 8.1e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002084 3 2 2 2 3 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55430 PF03514 GRAS 1.90E-93 CL0063 Hepe TF