Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1305 ATGAGCTGCAACGGCTGCCGCGTTCTTCGAAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGCTTGCAATGGATCGACACTTCCGAAGCCCAAGGCCACGCCACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATTTCCGCCGTCCCTGAATCTCAGAGACCTTCTCTGTTTCAATCTTTGTTATTCGAAGCCTGCGGACGCACTGTTAATCCGGTGAACGGCGCCGTTGGCCTTCTCTGGACTGGCAACTGGCATATTTGTCAAGCCGCCGTCGACACCGTCCTACGTGGCGGCACCTTGCGCCCCATCAACGAATTCCTCGCCGGTGGATCTCCCAATCTTACTTCCGACGACACCTCCGAGCCTGAAGTCGCCTGTTCCGACATGTGGAAGCTTCGAGAACATCATTCTTATCCCAATTCTCGATTCTCCAACTCCCGATCCAGACTCTCCCCGAAACGCAAGCGATCCGACCAACAACTCAACGACCTCGATCTCCGCTTGACGCCGAATTTTGCGGCGAAATCGTCAATATCAACCCCTCCACGGGCTGGTACTCCGTCGATGAATTCAGAGGAATCCGAAACCACAACGTGCTTCGAAAGCGGCCTCCATCACTACTATCCAGAAGAAGCCACCGCCGACGAACGGAAGCTTCTGAAATTGTTCGTCTAA 696 55.03 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVDTVLRGGTLRPINEFLAGGSPNLTSDDTSEPEVACSDMWKLREHHSYPNSRFSNSRSRLSPKRKRSDQQLNDLDLRLTPNFAAKSSISTPPRAGTPSMNSEESETTTCFESGLHHYYPEEATADERKLLKLFV 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68662327 68663564 - Hsped.04g13050.1 Hepe04g1305 568443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1305 231 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Hepe04g1305 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 230 - GO:0010468(PANTHER)
Hepe04g1305 231 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Hepe04g1305 231 MobiDBLite consensus disorder prediction 146 202 - -
Hepe04g1305 231 MobiDBLite consensus disorder prediction 179 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0980 Hepe-Chr2:11929986 Hepe04g1305 Hepe-Chr4:68662327 4.71e-53 dispersed
Hepe04g1305 Hepe-Chr4:68662327 Hepe09g0340 Hepe-Chr9:2984055 3.64e-49 dispersed
Hepe01g1821 Hepe-Chr1:83160114 Hepe04g1305 Hepe-Chr4:68662327 8.81e-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55431 PF03195 LOB 3.40E-25 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1305 - - - 0.0