Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1315 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAATCTGAGCAATCTTACAATTCCAGCAGAACAAATTCCAGCAGCTCTAGATCTTCAAGACAAAATCAATATCACTACAATCAATACCAACAACAAGACGAAGAATGCTACAATCTTCTCATGGATGACGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATAATAATAATAATAATGATCCGTACCATCCTGGCGGCCATCATCAACCTTCCACCGCCACTGCCACTGCCACCACTCCAACTCCGATCGATCAATTCTCATTCATCTCCCCATCTCCTCCGGATTTCAACTTCGAATTTTCCGGGAGGTGGGCCCCAGAGATTCTCCTTGAAACAGCCAGGGCTATTTCTGACAGGAACAGCGCGCGCGTTCAGCAATTGATGTGGATGTTAAACGAACTCAGCTCACCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTTCTGCAGGCCTTGTTTAGCCGTATCACTGATTCCGGCGACCGTAATTATCGCGCTTTGGCCTCCGCCTCTGAGAAAACCTGCTCCTTCGAATCCACTAGGAAAACGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTCGGCCATGTCTCTTGCAATGGCGCGTTGATTGAAGCTTTGGAGGGTGAATCGAAGCTACATATAATCGATATCAGCAACACCTATTGCACTCAGTGGCCTACTTTACTAGAAGCCCTAGCAACTCGCACCGACGACACGCCGCACCTCCGTCTCACCACGGTCGTCACCACCAAGACCGGCGGAGGAGGAGTTTCCGCATCTCAGAAAGTAATGAAGGAAATAGGTACGAGAATGGAGAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCACCACGCTTTACCATTCCGGCGACCTTTCGGAATTCGACTTGGCTAAATTAGACATCAAGGAAGACGAGGCACTCGCCGTCAACTGCGTCGGAGCGTTACGTTCCGTGACGGCGATTAATAACCGCCGAGATTTCTTGATTTCGTCTTTCCGGAGTTTGCGGCCGCGGATAATCACGGTGATTGAAGAGGAAGCCGATCTCGATGTAGGCGTCGAGGGGATTGAATTTCTGAGAGGGTTCCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACGAGCAACGAGCGGTTGATGCTAGAGAGAGCAGCCGGTAGGGCAATCGTAGACCTGGTGGCTTGCTCGGCGGCGGAGTCCGTGGAGAGGAGGGAATCGGCAGCGCGGTGGGCACAGCGGCTGCATGGAAGCGGATTCAGTCCGGTGACGTTCAGCGATGAAGTATCCGACGACGTAAGGGCGCTGTTGAGAAGGTACAAGGAAGGATGGGCGATGACACAGAGCTCAGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1500 50.67 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYHYNQYQQQDEECYNLLMDDEDFSSSSNSRQYYNNNNNNDPYHPGGHHQPSTATATATTPTPIDQFSFISPSPPDFNFEFSGRWAPEILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRITDSGDRNYRALASASEKTCSFESTRKTMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKTGGGGVSASQKVMKEIGTRMEKFARLMGVPFKFTTLYHSGDLSEFDLAKLDIKEDEALAVNCVGALRSVTAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVEGIEFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPVTFSDEVSDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68769049 68770822 - Hsped.04g13150.1 Hepe04g1315 568453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1315 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 69 497 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Hepe04g1315 499 MobiDBLite consensus disorder prediction 56 101 - -
Hepe04g1315 499 Pfam GRAS domain family 120 498 IPR005202 -
Hepe04g1315 499 ProSiteProfiles GRAS family profile. 109 498 IPR005202 -
Hepe04g1315 499 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1077 Hepe-Chr3:60769915 Hepe04g1315 Hepe-Chr4:68769049 3.00e-144 dispersed
Hepe04g1304 Hepe-Chr4:68641051 Hepe04g1315 Hepe-Chr4:68769049 1.96e-50 dispersed
Hepe04g1315 Hepe-Chr4:68769049 Hepe09g1143 Hepe-Chr9:13336648 8.29e-38 dispersed
Hepe03g1431 Hepe-Chr3:71072483 Hepe04g1315 Hepe-Chr4:68769049 1.44e-35 transposed
Hepe10g1414 Hepe-Chr10:50776035 Hepe04g1315 Hepe-Chr4:68769049 2.95e-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55434 PF03514 GRAS 6.50E-105 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1315 K27743 - csv:101204711 800.045