Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1324 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACGATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTTTGGCCCAAAAACATCATGATAATCCTATGGCTGTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCCCTTGCAATTTCGAATGGAACAATTCGCACTATTGGTCCAAAAGAACCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTACCAACTTAAAGGAACCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCACATGACTGCAAACGGAAAGCTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCACCCTTATCTGGAAGAAATGTTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGGTGGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCGGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAAAGAAGCAGAAGACGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACGTTCCCTAGTAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 924 43.83 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLAQKHHDNPMAVSTVLQNEEIVDAKPLAISNGTIRTIGPKEPLARLDKLISEAITNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLSGRNVPLLLLEDKQMDSSKVEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAKEAEDAEAEAESAQVFAEAAMKALECRTFPSRSPIQKVLLQDNKTLQ 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68823358 68830129 - Hsped.04g13240.1 Hepe04g1324 568462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1324 307 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Hepe04g1324 307 CDD SANT_TRF 6 57 - -
Hepe04g1324 307 Gene3D - 2 59 - -
Hepe04g1324 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Hepe04g1324 307 PANTHER SINGLE MYB HISTONE 4 1 287 IPR044597 GO:0003691(InterPro)
Hepe04g1324 307 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe04g1324 307 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe04g1324 307 FunFam Telomere repeat-binding factor 1 2 58 - -
Hepe04g1324 307 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Hepe04g1324 307 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Hepe04g1324 307 Gene3D - 118 191 IPR036388 -
Hepe04g1324 307 SMART sant 4 59 IPR001005 -
Hepe04g1324 307 FunFam Telomere repeat-binding factor 1 116 197 - -
Hepe04g1324 307 Coils Coil 239 276 - -
Hepe04g1324 307 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe04g1324 307 SUPERFAMILY Winged helix DNA-binding domain 116 192 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1324 Hepe-Chr4:68823358 Hepe08g0681 Hepe-Chr8:6116629 2.20e-07 dispersed
Hepe02g1515 Hepe-Chr2:19792414 Hepe04g1324 Hepe-Chr4:68823358 6.58e-33 transposed
Hepe04g1324 Hepe-Chr4:68823358 Hepe07g0407 Hepe-Chr7:4143117 7.35e-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55436 PF00538 Linker_histone 2.00E-11 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1324 K09422 - csv:101202913 489.574