Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1324 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACGATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTTTGGCCCAAAAACATCATGATAATCCTATGGCTGTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCCCTTGCAATTTCGAATGGAACAATTCGCACTATTGGTCCAAAAGAACCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTACCAACTTAAAGGAACCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCACATGACTGCAAACGGAAAGCTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCACCCTTATCTGGAAGAAATGTTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGGTGGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCGGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAAAGAAGCAGAAGACGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACGTTCCCTAGTAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 924 43.83 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLAQKHHDNPMAVSTVLQNEEIVDAKPLAISNGTIRTIGPKEPLARLDKLISEAITNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLSGRNVPLLLLEDKQMDSSKVEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAKEAEDAEAEAESAQVFAEAAMKALECRTFPSRSPIQKVLLQDNKTLQ 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68823358 68830129 - Hsped.04g13240.1 Hepe04g1324 568462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1324 307 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Hepe04g1324 307 CDD SANT_TRF 6 57 - -
Hepe04g1324 307 Gene3D - 2 59 - -
Hepe04g1324 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Hepe04g1324 307 PANTHER SINGLE MYB HISTONE 4 1 287 IPR044597 GO:0003691(InterPro)
Hepe04g1324 307 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe04g1324 307 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe04g1324 307 FunFam Telomere repeat-binding factor 1 2 58 - -
Hepe04g1324 307 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Hepe04g1324 307 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Hepe04g1324 307 Gene3D - 118 191 IPR036388 -
Hepe04g1324 307 SMART sant 4 59 IPR001005 -
Hepe04g1324 307 FunFam Telomere repeat-binding factor 1 116 197 - -
Hepe04g1324 307 Coils Coil 239 276 - -
Hepe04g1324 307 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Hepe04g1324 307 SUPERFAMILY Winged helix DNA-binding domain 116 192 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1324 K09422 - - csv:101202913 489.574
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1324 Hepe-Chr4:68823358 Hepe08g0681 Hepe-Chr8:6116629 2.20e-07 dispersed
Hepe02g1515 Hepe-Chr2:19792414 Hepe04g1324 Hepe-Chr4:68823358 6.58e-33 transposed
Hepe04g1324 Hepe-Chr4:68823358 Hepe07g0407 Hepe-Chr7:4143117 7.35e-77 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0407 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 58.9 1.5e-72 270.0
Hepe04g1324 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 5.0e-63 238.4
Hepe04g1324 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 2.4e-65 246.1
Hepe04g1324 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.8 5.6e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55436 PF00538 Linker_histone 2.00E-11 CL0123 Hepe TF