Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1342 ATGAATAATGTTAATGACAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCTAATGTTAATATGGAGCTCTCTTCTTCCTCTGCTACTGCTGTTGTCTCCCCTTCAATTCCTCCAAATTTTTTTCACTCCCCATCTCAGTATAACAACTATGGCATTTGCTATGGTGTTGATAATGGAGAACATAGTGGCTTTTATTCACCATTGTCTGTCATGCCGCTCAAGTCTGATGGTTCAATTTGTTCAATGGAAGCTCTCACCAGGCAGCAGCAGCAGCAGCATCCACAAGTGGTGGTGAGTAGCAGCTCTACTCCAAAACTAGAAGATTTTTTTGGTGGTGCAACAATGGGGTCCCATCACTATGAAAGCAATGACAGAGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCAGCCCAACAACCAACCCTTTGCACATTTCTCATCCTTAAGAAGCCGTGAAATGATGCTTCAAGACTCCAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAGCATCCAACAGTGGCAGAGAGTGATATTTCTGGTATGAAAAATTGGGGTGTTCCTAGGAACTATGCTGCTGCTGCTACCAACAATGGTTCGTTCGAGCAGAAGATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCTATGTCTTATGGGGATTTACAGTCATTGAGCTTGTCTATGACTACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTTACAGCCACACAGCATGTCTCACCTGCCATGACTGACTGTCCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGATGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGCCAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCTCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTGGCTCATCTGAGAAGGAGAAGCAGCGGGTTCTCGAGGGGGGCCTCGATTTACCGAGGTGTAACAAGACATCATCAACATGGTAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAATAAAGATTTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAGGCCTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGACATCACGAGGTATGACGTGGAGCGGATCATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGCGAAAGCAGCAGCCAGAGATTGATAATGAATCTCTTAGGCAAAGCCCTCCTACTCACAACAGCAATACAGAAATTATGCCTTTGCACTCACAGAGTAGTCATCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCAGTCATCTCAGCAGCTCATTCCGAAACCTCGGTTGTTGTCTGCGATAACCGATGACGAATCACAACTCGGACTCGAAGATTCAGCCAAAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACAACCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACGAGCCTTTCAATGGTGTTTGGAATGCCTCAGTCGACATCTAAGCAGTTTGCTGCCACGGCTAGTAATAATATGAACTCCTCCTGGATTGCATCTGCCCAGCAGTTGAGAACAGCCAATTGTATGAGTCAGTTGCCAGTTTTTGCTTCATGGACTGATACTTAA 1920 45.36 MNNVNDNNCNWLGFSVSPNVNMELSSSSATAVVSPSIPPNFFHSPSQYNNYGICYGVDNGEHSGFYSPLSVMPLKSDGSICSMEALTRQQQQQHPQVVVSSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNQPNNQPFAHFSSLRSREMMLQDSKVILPDGCNLQQQQQHPTVAESDISGMKNWGVPRNYAAAATNNGSFEQKMVSCMSENGGESGPINAMSYGDLQSLSLSMTTMSPSSQSSCVTATQHVSPAMTDCPAMDTKKRGHEKMDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKASRAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEIDNESLRQSPPTHNSNTEIMPLHSQSSHQSESDWKMALYQSSQQLIPKPRLLSAITDDESQLGLEDSAKMGAHFSNASSMVTTCSLSSSREESPDKTSLSMVFGMPQSTSKQFAATASNNMNSSWIASAQQLRTANCMSQLPVFASWTDT 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69024398 69029558 + Hsped.04g13420.1 Hepe04g1342 568480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1342 639 Coils Coil 368 388 - -
Hepe04g1342 639 SUPERFAMILY DNA-binding domain 300 369 IPR016177 GO:0003677(InterPro)
Hepe04g1342 639 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 229 530 - -
Hepe04g1342 639 Pfam AP2 domain 404 454 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 Pfam AP2 domain 301 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 CDD AP2 300 367 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 CDD AP2 402 463 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 Gene3D AP2/ERF domain 403 463 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 Gene3D AP2/ERF domain 300 369 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 ProSiteProfiles AP2/ERF domain profile. 301 367 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 FunFam AP2-like ethylene-responsive transcription factor ANT 300 369 - -
Hepe04g1342 639 FunFam AP2-like ethylene-responsive transcription factor 402 463 - -
Hepe04g1342 639 ProSiteProfiles AP2/ERF domain profile. 403 461 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 PRINTS Ethylene responsive element binding protein signature 443 463 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 PRINTS Ethylene responsive element binding protein signature 302 313 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 MobiDBLite consensus disorder prediction 481 520 - -
Hepe04g1342 639 SMART rav1_2 403 467 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 SMART rav1_2 301 373 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1342 639 MobiDBLite consensus disorder prediction 492 520 - -
Hepe04g1342 639 SUPERFAMILY DNA-binding domain 402 462 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1531 Hepe-Chr2:20239052 Hepe04g1342 Hepe-Chr4:69024398 3.18e-119 dispersed
Hepe04g1342 Hepe-Chr4:69024398 Hepe08g1835 Hepe-Chr8:45654109 6.39e-104 dispersed
Hepe01g1850 Hepe-Chr1:83397307 Hepe04g1342 Hepe-Chr4:69024398 2.75e-50 wgd
Hepe10g1430 Hepe-Chr10:50968401 Hepe04g1342 Hepe-Chr4:69024398 9.25e-47 wgd
Hepe04g1342 Hepe-Chr4:69024398 Hepe08g1355 Hepe-Chr8:15751383 4.92e-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55440 PF00847 AP2 1.00E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1342 K09285 - csv:101203323 1121.69