Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1352 ATGCCAAAGAAAGATTCGTCTGTCTCCTCATTCTTTCCTTTCATTATTAATCTCATTGCCCACCAACCCAATTCCCATCTCTTATTAAACCCATTCCCACTTCTCAAAATCCAACACAATTTCTCCCCAAAATTTCAAAAGATGGGTTTTGATGATCTTTCTAATACAGGTCTTCTTTTGGGTTTGGGGTTAACTCTTCCATCCAAATCCATTCCTCATCATTTTTCTCAAAAACCCAAGAACCCAATTATCGATTTATTCACTGAGCCCTCTTTAACTTTGGGGCTTTCCACTACTGTTGATTTGCCTCGCCAACCCTCACCACACAGCGCGGTTTCTTCCTTCTCCGGCGGCAGGGTCAAGCGCGAAAGAGACGTTTCCGGTGGTGACGAGATTGAAGAAGATCAGAAAGCTTCTTCCAGAATTAGTGATGAAGATGAAGATGGGTCTAATGCTAGAAAAAAACTTAGGCTTACTAAACAACAATCTGCTCTGTTGGAGGAGAGTTTCAAACTTCACAGCACTCTCAACCCTAAGCAAAAGCAAGCCTTAGCCAGAGAGTTGAATCTTCGACCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTGACAGACGAAAACAGAAGGCTGCAAAAAGAGCTCCAAGAACTCAAAGCCCTCAAATTAGCGCAGCCTCTGTTTATGCAAATGCCGGCGGCGACACTCACCATGTGTCCGTCCTGCGAGCGGATCGGCGGTGGCGCCGCCGCCGTTAACGCCGACGGAAATTCCAAGGGCCCATTTTCGATGGCCCCCAAGCCCCGGTTTTACAAAGCCTTCACCAATCCTTCTGCTGCTTGCTAA 909 46.2 MPKKDSSVSSFFPFIINLIAHQPNSHLLLNPFPLLKIQHNFSPKFQKMGFDDLSNTGLLLGLGLTLPSKSIPHHFSQKPKNPIIDLFTEPSLTLGLSTTVDLPRQPSPHSAVSSFSGGRVKRERDVSGGDEIEEDQKASSRISDEDEDGSNARKKLRLTKQQSALLEESFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGAAAVNADGNSKGPFSMAPKPRFYKAFTNPSAAC 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69173731 69175314 + Hsped.04g13520.1 Hepe04g1352 568490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1352 302 Coils Coil 215 245 - -
Hepe04g1352 302 Pfam Homeodomain 153 207 IPR001356 GO:0003677(InterPro)
Hepe04g1352 302 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe04g1352 302 CDD homeodomain 153 210 IPR001356 GO:0003677(InterPro)
Hepe04g1352 302 SMART HOX_1 151 213 IPR001356 GO:0003677(InterPro)
Hepe04g1352 302 MobiDBLite consensus disorder prediction 98 114 - -
Hepe04g1352 302 SMART halz 209 252 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1352 302 Pfam Homeobox associated leucine zipper 209 243 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1352 302 MobiDBLite consensus disorder prediction 98 154 - -
Hepe04g1352 302 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677(InterPro)
Hepe04g1352 302 MobiDBLite consensus disorder prediction 118 154 - -
Hepe04g1352 302 FunFam Homeobox-leucine zipper protein 18 137 214 - -
Hepe04g1352 302 Gene3D - 146 214 - -
Hepe04g1352 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 60 275 IPR050762 -
Hepe04g1352 302 SUPERFAMILY Homeodomain-like 144 210 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1708 Hepe-Chr3:74003902 Hepe04g1352 Hepe-Chr4:69173731 1.19e-62 dispersed
Hepe04g1352 Hepe-Chr4:69173731 Hepe05g0516 Hepe-Chr5:7049597 2.56e-64 dispersed
Hepe01g0469 Hepe-Chr1:61314157 Hepe04g1352 Hepe-Chr4:69173731 4.01e-44 transposed
Hepe02g2673 Hepe-Chr2:74407427 Hepe04g1352 Hepe-Chr4:69173731 1.76e-41 transposed
Hepe01g1859 Hepe-Chr1:83530720 Hepe04g1352 Hepe-Chr4:69173731 8.17e-63 wgd
Hepe04g1352 Hepe-Chr4:69173731 Hepe07g0591 Hepe-Chr7:6437643 1.73e-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55442 PF00046 Homeodomain 1.10E-15 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1352 K09338 - csv:101218782 397.897