Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1361 ATGACAGACATTAAACTTTCAAATTTAATATCCAAAAAGATGATGATGATGATGATGATGTGGTTTCTTCTGCAACTTCACTTTTCCCCTTCCTTCTCTGCTCTCTTATCTGAATCCGACGCCCTTCTCTCCCTCAAATCCTCCATTTCCAATGACCCTTCTTCTTCTCTCTCTTCCTGGAACGCCGCCGCTGCCGATCACTGTACATGGGTCGGCGTCACATGCGACGACCACCGCCGCGTCATCGTTCTCGACCTCTCTTCCCTCGACCTCACCGGCACCCTTTCCCCTGACCTTTCCTCTCTTCGATTTCTCACCAATGTTTCCTTCGCCCTCAACAAGTTTTCCGGCGGAATCCCACCGGAGATTGCGTCGATTTCTTCTCTCCGGCATCTCAATCTCTCTAGCAACGTCCTTAATGGGTCGATTCCTCCGGAGTTTTCGCAGCTCGGGAACCTACTGGTTCTTGATGTTTATAACAACAACATGACCGGCGATTTCCCCAGAGTGGTCACTGAAATGCCCAACCTCCGCCATTTGCACCTTGGGGGAAATTTCTTCACCGGTCGGATTCCTCCGGAAGTCGGACACTTGCAGTTCTTGGAGTTTTTGGCTATTCACGGCAATGACCTTGAAGGTCCGATACCGGCGGCGATCGGAAACTTGACGAAGCTTCGGGAACTCTTCATCGGTTACTACAACACCTTCGTCGGTGGAATACCGGCGGCGATAGGGAACTTGTCGGAGTTGGTTCGGTTAGATGCCGCGAACTGTGGGTTGTCCGGAAAGTTTCCGCCGGAGCTCGGAAAGTTGCAGAAGCTCAGTAAACTATTCCTTCAAGATAATGCGCTGTCGGGGCCATTGCCGGAGCTAGGAGGATTGAAGAGCATGGAAGCGTTGGATATATCATGCAATATGCTCGTTGGTGAAATACCCATCTCTTTTGCAGAGTTCAAGAACTTGAGGCTATTGCAACTTTTCAACAACAAGCTCACCGGAGCGATTCCGGGATTCTTAGCCGACCTCCCAAAGCTGGAGATATTGCAATTATGGAACAACAATTTCACAGGTTCGATTCCTCGCAATTTGGGGAAGAACGGGATGCTTCGAACTCTCGATCTTGCTTTCAACCATTTGACAGGTACGATTCCTCCTGAAATTTGCCATGGAAACCAGCTTGAAGTTTTGATCGCTATGGACAATTCCTTATCTGGTTCGATCCCAGAATCGTTAGGAAATTGTATTTCACTTAGGCGTATACTTCTGTGGGGCAACGCTCTCAATGGATCAATTCCAAAGGGGGTTTTGAGTTTGCCAAATCTCTCTCAGGTTGATTTGCACGACAATTTTCTCTCTGGGGAACTTCCCATTACCGATTCAGTCTCAGTTAATCTTCTTCAGATTAGTTTATCGAACAATATGCTCTCTGGATCCTTGCCACCCACCATCGGCAGCCTTTTCGCCGTCCAGAAGCTTCTTCTTGACCGGAATAAGTTTTCGGGTCAGATTCCTTCAAAGATTGGGAGATTACAGCAATTATCTCGGATAAATTTCAGCCAGAATGAGTTCTCTGGTATAATTGTGCCGGAGTTAAGTGAATGCAAGCATTTGATCTTCCTTGATCTCAGTGGAAATGAGCTTTCTGGTGAAATTCCTAGCAATATTACCAAGATGAAACTATTGACTTATATGAATCTATCAAGAAATCATTTAGTTGGGTCCATTCCTGCTTCAATAGTTAATATGCAGAGCTTAACTTCTGTGGACTTTTCATATAACAATCTCTCTGGTTTAGTTCTGGGAACTGGGCAATTTGGTTACTTCAATTACACATCATTTGTAGGCAACCCTTATCTCTGTGGTGCATATTTGGGGCCTTGCAAAGATGGGGTTGCCACTAGCAATCACCAACAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGACTCCTGCTAGTTTTTGGATTATTTTTCTGTTTAATTGCAGTGACAGTTGCATTGATCTTCAAAGTTCGGTCACTGAAGCGAGCGAGGGAGTTTAGAGGATGGAGATTAACAGCCTTCCAACGCTTGGGTTTCTCGATTGATGAGGTCTTAGATTGCCTTAAGAAGCAAAATGTGATTGCAAAAGGAGGTTATGGCACTGTATATGGAGTGATGCCTAGTGGTGATCAGGTCACTGTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTTCTAATGACCAAGGATTCGATGCCGAGATACAAGCTCTTGGCAGGATTCGAAACCGTCACATCGTTAGATTATTGGGTTTCTGTTCAAATCATGAAACTAATCTTTTGGTATATGAGTACATGCCTAATGGGAGTGTCTATGAGGTTCTCCATGGCAAGAAAGGAGGTCATTTGCTCTGGGATACGAGGTACAAGATAGCCATTGGAACTGCAAATGGACTTTGCTATCTTCACCACCATTGCTCACCGCCCATTGTTCATCGAGATGTGAAATCAAACAACATTATGCTAGATACCAACTTTGATCCTCAGCTTGCCAATTCTGGGCTTGCCAAGTTCTTACAAGATTCAGGCACATCGGATAGGCCAGCTCTTGATTCATCTGGATGTACCAAGCCAGGTATGACAATGACTGCAGCTAATTAA 2640 45.45 MTDIKLSNLISKKMMMMMMMWFLLQLHFSPSFSALLSESDALLSLKSSISNDPSSSLSSWNAAAADHCTWVGVTCDDHRRVIVLDLSSLDLTGTLSPDLSSLRFLTNVSFALNKFSGGIPPEIASISSLRHLNLSSNVLNGSIPPEFSQLGNLLVLDVYNNNMTGDFPRVVTEMPNLRHLHLGGNFFTGRIPPEVGHLQFLEFLAIHGNDLEGPIPAAIGNLTKLRELFIGYYNTFVGGIPAAIGNLSELVRLDAANCGLSGKFPPELGKLQKLSKLFLQDNALSGPLPELGGLKSMEALDISCNMLVGEIPISFAEFKNLRLLQLFNNKLTGAIPGFLADLPKLEILQLWNNNFTGSIPRNLGKNGMLRTLDLAFNHLTGTIPPEICHGNQLEVLIAMDNSLSGSIPESLGNCISLRRILLWGNALNGSIPKGVLSLPNLSQVDLHDNFLSGELPITDSVSVNLLQISLSNNMLSGSLPPTIGSLFAVQKLLLDRNKFSGQIPSKIGRLQQLSRINFSQNEFSGIIVPELSECKHLIFLDLSGNELSGEIPSNITKMKLLTYMNLSRNHLVGSIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFVGNPYLCGAYLGPCKDGVATSNHQQHMKGSLSTPLRLLLVFGLFFCLIAVTVALIFKVRSLKRAREFRGWRLTAFQRLGFSIDEVLDCLKKQNVIAKGGYGTVYGVMPSGDQVTVKRLPKMSNGCSNDQGFDAEIQALGRIRNRHIVRLLGFCSNHETNLLVYEYMPNGSVYEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHRDVKSNNIMLDTNFDPQLANSGLAKFLQDSGTSDRPALDSSGCTKPGMTMTAAN 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69236277 69240181 - Hsped.04g13610.1 Hepe04g1361 568499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1361 879 SUPERFAMILY Protein kinase-like (PK-like) 695 857 IPR011009 -
Hepe04g1361 879 Gene3D Transferase(Phosphotransferase) domain 1 779 875 - -
Hepe04g1361 879 MobiDBLite consensus disorder prediction 854 879 - -
Hepe04g1361 879 ProSiteProfiles Protein kinase domain profile. 702 879 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1361 879 Pfam Protein kinase domain 704 857 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1361 879 Pfam Leucine Rich Repeat 536 558 IPR001611 GO:0005515(InterPro)
Hepe04g1361 879 Pfam Leucine Rich Repeat 344 365 IPR001611 GO:0005515(InterPro)
Hepe04g1361 879 Pfam Leucine Rich Repeat 561 582 IPR001611 GO:0005515(InterPro)
Hepe04g1361 879 Pfam Leucine Rich Repeat 250 271 IPR001611 GO:0005515(InterPro)
Hepe04g1361 879 Pfam Leucine Rich Repeat 464 486 IPR001611 GO:0005515(InterPro)
Hepe04g1361 879 Pfam Leucine Rich Repeat 369 389 IPR001611 GO:0005515(InterPro)
Hepe04g1361 879 SUPERFAMILY L domain-like 367 626 - -
Hepe04g1361 879 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 671 778 - -
Hepe04g1361 879 Gene3D Phosphorylase Kinase; domain 1 678 778 - -
Hepe04g1361 879 SMART serkin_6 702 878 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1361 879 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Hepe04g1361 879 Pfam Leucine rich repeat 128 185 IPR001611 GO:0005515(InterPro)
Hepe04g1361 879 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 234 389 - -
Hepe04g1361 879 Gene3D Ribonuclease Inhibitor 352 631 IPR032675 -
Hepe04g1361 879 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 37 147 - -
Hepe04g1361 879 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 148 233 - -
Hepe04g1361 879 Gene3D Ribonuclease Inhibitor 36 190 IPR032675 -
Hepe04g1361 879 Gene3D Ribonuclease Inhibitor 191 289 IPR032675 -
Hepe04g1361 879 SMART LRR_typ_2 174 198 IPR003591 -
Hepe04g1361 879 SMART LRR_typ_2 367 390 IPR003591 -
Hepe04g1361 879 SMART LRR_typ_2 342 366 IPR003591 -
Hepe04g1361 879 SMART LRR_typ_2 126 150 IPR003591 -
Hepe04g1361 879 SMART LRR_typ_2 318 341 IPR003591 -
Hepe04g1361 879 SMART LRR_typ_2 582 605 IPR003591 -
Hepe04g1361 879 SMART LRR_typ_2 271 294 IPR003591 -
Hepe04g1361 879 Gene3D Ribonuclease Inhibitor 290 341 IPR032675 -
Hepe04g1361 879 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 391 631 - -
Hepe04g1361 879 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 873 IPR050647 -
Hepe04g1361 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1361 879 SUPERFAMILY RNI-like 84 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1361 Hepe-Chr4:69236277 Hepe07g0528 Hepe-Chr7:5597587 7.84e-71 dispersed
Hepe04g1361 Hepe-Chr4:69236277 Hepe04g1362 Hepe-Chr4:69258205 2.61e-124 tandem
Hepe01g2197 Hepe-Chr1:86678875 Hepe04g1361 Hepe-Chr4:69236277 4.22e-42 wgd
Hepe10g0394 Hepe-Chr10:4328805 Hepe04g1361 Hepe-Chr4:69236277 2.39e-37 wgd
Hepe02g0674 Hepe-Chr2:7414087 Hepe04g1361 Hepe-Chr4:69236277 5.73e-42 wgd
Hepe04g1361 Hepe-Chr4:69236277 Hepe07g0583 Hepe-Chr7:6307627 8.18e-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72751 PF00069 Pkinase 5.80E-25 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1361 - - - 0.0