Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1384 ATGGGTCGAGGGAAGATTGTGATTAGAAGGATTGATAATTCTGCAAGCAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTATTAAAAAGGCTAAAGAGCTCGCTATTCTCTGTGATGCTGAACTTGGACTCCTCATTTTTTCTAGCTCTGGCAAACACTATGAATTTGCAAGCACTAGCATAGAGTCAGTAATTGAGAAATATAACAAACGGAAGGAGGAAGATGAACTGCTGTTGAATCCAGCTTCGGATGTCAAGTTATGGCAGAAGGAAGTAGCAACTCTAAGGCAACAACTACTTAACTTGCAAGAGAATAATAGGAAATTAATGGGGGAGCAACTCTATGGTTTATCAATCAAAGACCTAAACAACCTTGAGAGTCAATTGGAGTTCAGCTTACAAAGTATCCGAATTAAAAAGGAACAAATGTTAAATGATGAAATAAAAGAATTGAACAGAAAGGGGATTTTGATGCACCAAGAAAATATAGAATTGAGCAAGAAAGTAAACATTTTTTGTCAAGAAAACATGGAATTACACAGAAGGATTTATGGGCATGATCACTCGAGATCAGAGATTAACTTAGCCACCAGAAACGACTTGATTCCTTATGGTATTATCAGCGCCGCCGCCGCCCCAGTTGCAGGCGACGCCCTGCGTGTGCCAATCCATCTTCAGCTCAACCCGCCGGAGCAACAAACTTAA 708 40.25 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELAILCDAELGLLIFSSSGKHYEFASTSIESVIEKYNKRKEEDELLLNPASDVKLWQKEVATLRQQLLNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKEQMLNDEIKELNRKGILMHQENIELSKKVNIFCQENMELHRRIYGHDHSRSEINLATRNDLIPYGIISAAAAPVAGDALRVPIHLQLNPPEQQT 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69499031 69502183 - Hsped.04g13840.1 Hepe04g1384 568522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1384 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1384 235 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1384 235 Pfam K-box region 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe04g1384 235 Coils Coil 123 143 - -
Hepe04g1384 235 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe04g1384 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1384 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1384 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1384 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1384 235 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1384 235 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1384 235 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe04g1384 235 Coils Coil 86 113 - -
Hepe04g1384 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1384 Hepe-Chr4:69499031 Hepe07g0369 Hepe-Chr7:3752332 3.46e-66 dispersed
Hepe01g2184 Hepe-Chr1:86516586 Hepe04g1384 Hepe-Chr4:69499031 2.53e-67 wgd
Hepe10g0423 Hepe-Chr10:4743159 Hepe04g1384 Hepe-Chr4:69499031 1.11e-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55447 PF01486 K-box 1.20E-22 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1384 K09264 - csv:101206453 394.045