Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1385 ATGGAGAAGAAACAGCCATGGATTTGGAAACTTGGATTCTCAGCAATGGCGCTCCTTTTCTTATGTTTCACTTCAACGCTCGCTAATGCACATTCCTCCCAACACAAATACAGAAGAATGCTAAGAAATTTGGTGGAGAAGGAGAAGAACGAATCAATGTTGCCACACATTGTAACGCTAGATTGGCAGAATCATGGACAGGTGGTGTTGGATAATGGCATAGTTCGAGTGACTTTATCTCGTCCAGAAGGCAATGTTGTAGCCATTAAATACCATGCTATTGATAACGTACTCGAAATTCACAATGCACATCATAACAGAGGATATTGGGACGTGGTTTGGAACCACCCAAATAAAACTGGTGCCATTGACAGATTAAGGGCAACCCAATTCAAAGTGATTAAGGCCAACAGTGAGCAAATTGAGGTTTCTTTCACCAAAAAATGGGATCCTTCCTCACGCCATTCCTCACTCCCTTTGAGCGTAGACAAGAGGTATATTCTGCGACGTGGCGATTCTGGGTTCTATGCATATGGCATATTTGAACGGCTTGATGGGTTTCCTCAAATTGACGTGGATCAAATCAGAATCGCCTTCAAACTCCAAAGAGACAAATTTCATTACATGGCTGTATCCGACGACAGACAGAGGATCATGCCAACGCAACATGACCGTAATACCGGGCACCGTCTCGATTACGCGGAGGCAGTTCACTTAACCCGACCCGTGAATTCCAACCTCAAAGGAGAGGTGGACGATAAGTATCAGTACTCGGTGGAGAATAGGGAGAACAAGGTTCATGGATGGGTTTCGACGAACCCACGCGTAGGGTTCTGGATGATCACACCTAGTGATGAGTTTCGTACAGCGGGGCCCGTCAAACAAGATCTTACTTCTCATGTTGGACCCACCACACTCTCTATGTTCGTGAGTACGCATTATGCGGGAAAAGATGTTTCGATGAGATTTGGAGAGGGAGAAGCATGGAAGAAGGTTTTCGGACCGGTGTTCATTTATCTCAACTCGGATCGAACCGGCAATGAAACTCCCGGTTCACTATGGGAAGATGCTAAAAACCAGATGGGTTTAGAAACGAGTAAGTGGCCATACAGCTTCGTTGAATCCAGAGATTTTGCTGCATCGGACCAAAGAGGAACCGTGACTGGTCAATTAATGGTCCGAGATAGATACGCTGCCAACAATAGTATGTGGGCCGATTCTGCGTTTGTGGGCCTTGCAGCTCCCGGGGCAGTGGGGTCCTGGCAAAGAGAGAGCAAGGGATATCAATTCTGGACGCGCGCGGACAGCCATGGATTTTTCTCCATTGAAAACATAAGGCCTGGTACCTACAATCTATACGCATGGGTACCTGGCGTCATCGGCGATTACAAGTACGACGGCGACATCACCGTCACGCCGGCGAGTTCCACCAACCTGAGCATTATAATCTACGACCCTCCAAGACAAGGCCCAACTCTGTGGGAGATCGGCGTCCCAGATCGGACGGCGGCCGAGTTCTACATCCCCGATCCCGAACCCACCCTCATGACCCGCTTTTACAACAATTCCAATTTCCAAACCATAGATAAATTCCGACAGTACGGCCTCTGGGAACGCTACGCCGATTTGTATCCCGATCAAGATCTGGTCTACACCGTCGGCACCGACGACTACCGCCGCGACTGGTTCTACGCTCACGTGACCAGAGCCATCGGTTCCGGTGAATACAGGGCAACCACGTGGCAGATCGTGTTTCGTCTTCCAGGGCCGAAACAGACCGGCAACTATATTCTCCGGTTGGCCTTGGCGTCGTCTACAGAGGCGGTGGTCGACATCCGGTTCAACGACCCGTTGAAGATACGGCCTCATTTCACGACCGGGTATTGGTCCGCCGGGCAAGATAACGCTATTGCAAGACATGGCATTCATGGGCTTTATTCGTTATACGAGTTCGAGGTTCCATCTCGGTATTTGCTTGAGGATCAAAATAACATAATTTATCTTACACAGAGAAGAATTGCAGGGCCTTTTCAAGGAGTAATGTACGATTACATACGATTCGAAGCTGTAGTATAA 2076 48.41 MEKKQPWIWKLGFSAMALLFLCFTSTLANAHSSQHKYRRMLRNLVEKEKNESMLPHIVTLDWQNHGQVVLDNGIVRVTLSRPEGNVVAIKYHAIDNVLEIHNAHHNRGYWDVVWNHPNKTGAIDRLRATQFKVIKANSEQIEVSFTKKWDPSSRHSSLPLSVDKRYILRRGDSGFYAYGIFERLDGFPQIDVDQIRIAFKLQRDKFHYMAVSDDRQRIMPTQHDRNTGHRLDYAEAVHLTRPVNSNLKGEVDDKYQYSVENRENKVHGWVSTNPRVGFWMITPSDEFRTAGPVKQDLTSHVGPTTLSMFVSTHYAGKDVSMRFGEGEAWKKVFGPVFIYLNSDRTGNETPGSLWEDAKNQMGLETSKWPYSFVESRDFAASDQRGTVTGQLMVRDRYAANNSMWADSAFVGLAAPGAVGSWQRESKGYQFWTRADSHGFFSIENIRPGTYNLYAWVPGVIGDYKYDGDITVTPASSTNLSIIIYDPPRQGPTLWEIGVPDRTAAEFYIPDPEPTLMTRFYNNSNFQTIDKFRQYGLWERYADLYPDQDLVYTVGTDDYRRDWFYAHVTRAIGSGEYRATTWQIVFRLPGPKQTGNYILRLALASSTEAVVDIRFNDPLKIRPHFTTGYWSAGQDNAIARHGIHGLYSLYEFEVPSRYLLEDQNNIIYLTQRRIAGPFQGVMYDYIRFEAVV 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69514034 69518988 + Hsped.04g13850.1 Hepe04g1385 568523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1385 691 CDD RGL4_M 383 479 IPR029413 -
Hepe04g1385 691 SUPERFAMILY Galactose-binding domain-like 490 688 IPR008979 -
Hepe04g1385 691 Gene3D - 490 687 - -
Hepe04g1385 691 Pfam Polysaccharide lyase family 4, domain II 406 478 IPR029413 -
Hepe04g1385 691 SUPERFAMILY Galactose mutarotase-like 65 347 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Hepe04g1385 691 CDD RGL4_C 494 688 - -
Hepe04g1385 691 Gene3D - 379 482 - -
Hepe04g1385 691 Gene3D - 61 362 IPR014718 GO:0030246(InterPro)
Hepe04g1385 691 Pfam Polysaccharide lyase family 4, domain III 492 687 IPR029411 -
Hepe04g1385 691 FunFam Rhamnogalacturonate lyase B 380 479 - -
Hepe04g1385 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 689 IPR051850 -
Hepe04g1385 691 SUPERFAMILY Starch-binding domain-like 380 482 IPR013784 GO:0030246(InterPro)
Hepe04g1385 691 Pfam Rhamnogalacturonate lyase family 58 251 IPR010325 -
Hepe04g1385 691 CDD RGL4_N 60 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1385 Hepe-Chr4:69514034 Hepe04g1757 Hepe-Chr4:72569219 1.68e-210 dispersed
Hepe01g2180 Hepe-Chr1:86473331 Hepe04g1385 Hepe-Chr4:69514034 1.65e-247 wgd
Hepe10g0445 Hepe-Chr10:5032406 Hepe04g1385 Hepe-Chr4:69514034 4.61e-253 wgd
Hepe04g1385 Hepe-Chr4:69514034 Hepe07g0578 Hepe-Chr7:6237066 2.34e-291 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1385 K18195 - csv:101206696 996.112