Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1400 ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCCAAGCGCCGGAGGGGACTTTTCAAGAAAGCTAAAGAGTTATCCGTTCTATGCGATGCCGATGTCGCTCTTATTATCTTCTCCACCACCGGAAAGCTGTTTGAGTACTCCAGCTCAAGCATGAAGGGAATTATTGAGAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAACAGCAATTACACCCGATTAAACAAGGAAATTGCCGAGAAAACTCATCAGCTAAGGCAGATGAGGGGAGAGGAGCTCCAAACATTGAATATAGAGCAATTGCAGCAGCTAGAGAAGTCACTGGAGTCTGGTTTGAGCCGTGTGATGGAGAAAAAAGGCGAACGGATCATGAAAGAAATCACTGATCTTCAAAGAAAGTCGGCCGAGTTGATGGAAGAGAATAAGCGACTGAAACAACAAGCGGAGAGGATGAATGGCGTGAGGCACGTCGTCGTGGAGCCGGAGATTTTGGTGGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTATCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGCTGCCGTATTCCGGGTGA 687 48.03 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEQLQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMEENKRLKQQAERMNGVRHVVVEPEILVVEDGQSSNSVTEACISNSNGPPQDLESSDTSLKLGLPYSG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69624078 69628958 - Hsped.04g14000.1 Hepe04g1400 568538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1400 228 Pfam K-box region 91 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe04g1400 228 Coils Coil 94 114 - -
Hepe04g1400 228 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe04g1400 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1400 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe04g1400 228 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1400 228 Coils Coil 143 177 - -
Hepe04g1400 228 MobiDBLite consensus disorder prediction 199 228 - -
Hepe04g1400 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1400 228 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1400 228 Coils Coil 121 141 - -
Hepe04g1400 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe04g1400 228 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1400 228 FunFam Transcription factor, MADS-box 13 83 - -
Hepe04g1400 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1400 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe04g1400 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1400 Hepe-Chr4:69624078 Hepe07g0362 Hepe-Chr7:3674099 1.07e-56 dispersed
Hepe10g0423 Hepe-Chr10:4743159 Hepe04g1400 Hepe-Chr4:69624078 2.37e-88 wgd
Hepe02g0720 Hepe-Chr2:7912234 Hepe04g1400 Hepe-Chr4:69624078 4.34e-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55449 PF01486 K-box 1.30E-15 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1400 - - - 0.0