Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1407 ATGGCGGATAGTTTTTACTGTACAGAGAGCGCCAATACTTGTTTTGATGAATTTGATTGTAATGCCACAATTTCTCCGACCCACCGAAGAACCCGTGACCCGAATGTTGACTATTTCGAATCCGAGACTGAAGAGAGGATTAGAGAAATGGTTGGAAAAGAGATTGAGCATTTGCCCAGATATGATTATCTTAAGAGAATCCACAGTGGGGATTTCGATTTGAACTTTAGGAAACAGGCTGTTGATTGGATTTCCAAGGTTCATGCCCATTACAGCTTTGGACCATTGAGTCTTTGTCTATCTATGAACTACTTGGACCGTTTCCTCTCAGTGTATCACATGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCAGTAGCTTGTGTGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTTCCTCTTCCCATAGATTTACAGGTTGAGGAACCCAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTCTTGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATCACTGTTGGGCAGCACATACCAAGTCAATCCTTCTTTAAATCATCACAGCTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAGTTTAGGCCCTCTGAAATTGCTTTGGCTGTAGCAATTTCCATTTCAGGAGAATTGCAAGCACCAGACATGGATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAGAGTGATGAAGTGTATTGAACTGATAAGAGATTTGTCATTGATTAATAATGTGTATGGAGGAAATGCATTGGTTCCTCAGAGTCCTGTTGGAGTATTGGATGCAGCTTGTTTGAGTTACAAAACAGAGGAATTTACTGCAGGAAGGTCATGTGGTAATTCTTCTTCTTCTTCTTCTTCAAATGACAGTCCAGACAGCAAGAGGAGGAGACAAGACAGACCATCATCAAAACATGATTCAACTCCATCCAGTCCTGTCAAATGA 1035 40.77 MADSFYCTESANTCFDEFDCNATISPTHRRTRDPNVDYFESETEERIREMVGKEIEHLPRYDYLKRIHSGDFDLNFRKQAVDWISKVHAHYSFGPLSLCLSMNYLDRFLSVYHMPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVGQHIPSQSFFKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMDKAILSFPYMEKERVMKCIELIRDLSLINNVYGGNALVPQSPVGVLDAACLSYKTEEFTAGRSCGNSSSSSSSNDSPDSKRRRQDRPSSKHDSTPSSPVK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69713449 69715245 + Hsped.04g14070.1 Hepe04g1407 568545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1407 344 FunFam D6-type cyclin 173 264 - -
Hepe04g1407 344 FunFam D2/4-type cyclin 60 172 - -
Hepe04g1407 344 Pfam Cyclin, N-terminal domain 48 176 IPR006671 -
Hepe04g1407 344 Gene3D - 60 177 - -
Hepe04g1407 344 MobiDBLite consensus disorder prediction 304 344 - -
Hepe04g1407 344 MobiDBLite consensus disorder prediction 320 334 - -
Hepe04g1407 344 CDD CYCLIN_AtCycD-like_rpt1 77 174 - -
Hepe04g1407 344 SMART Cyclin_C_2 179 317 IPR004367 -
Hepe04g1407 344 ProSitePatterns Cyclins signature. 77 108 IPR048258 -
Hepe04g1407 344 SUPERFAMILY Cyclin-like 35 176 IPR036915 -
Hepe04g1407 344 PANTHER CYCLINS 41 240 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe04g1407 344 SMART cyclin_7 82 170 IPR013763 -
Hepe04g1407 344 CDD CYCLIN_AtCycD-like_rpt2 179 266 - -
Hepe04g1407 344 Gene3D - 49 264 - -
Hepe04g1407 344 Pfam Cyclin, C-terminal domain 179 270 IPR004367 -
Hepe04g1407 344 MobiDBLite consensus disorder prediction 304 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1799 Hepe-Chr1:83023714 Hepe04g1407 Hepe-Chr4:69713449 5.56e-47 dispersed
Hepe02g0604 Hepe-Chr2:6278705 Hepe04g1407 Hepe-Chr4:69713449 8.03e-44 dispersed
Hepe04g1407 Hepe-Chr4:69713449 Hepe08g1303 Hepe-Chr8:14698500 1.07e-53 dispersed
Hepe07g0403 Hepe-Chr7:4097261 Hepe04g1407 Hepe-Chr4:69713449 8.80e-60 transposed
Hepe08g0502 Hepe-Chr8:4412557 Hepe04g1407 Hepe-Chr4:69713449 2.78e-36 transposed
Hepe10g0446 Hepe-Chr10:5063334 Hepe04g1407 Hepe-Chr4:69713449 6.15e-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1407 K18810 - csv:101209378 525.783