Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1432 ATGGAATTTTCCGGCGATCCACGGGTTCCGTTGCACAATCTCTCCACGATCCGCTCCAGAATGGACGCCGTCCAAATCTTCCTGTCCGATAACATCGACAGAGAAATTCGTATCAGCAATCAACAGATGGATGCGGTTTCGTCTGAAATCGCCACCGCGATCCAACAGATTATCGTCAACGGCGCCGCTCTTCTCGCCTGCGCCCAAGCGAAAACCCCCAATATGCCGGATTTGACCGGTTCAACCACTCCGAGTTCTGTAACGGGGAAATCAATTGTGGAGATGAAGGTCGAGGCTGTGGATGAGATTGCGAGACTCGAATCTGAGGAATTTGATGCGGATTGTGAAATAGTGGAGCTGGATGCGATGGAATTGCTAGCGGAGCATATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGCGATGCGAATTTGAGGATGCATATGCGGGCTCACGGGAACCAATTCAAAACACCTGAGGCGTTGGCGAAGCCGCCGTTGGATGTTGTTGCTGCTGCGACTGCGGACCACAGGGCGAAGCGGACGCGGTTTTCGTGCCCTTACGACGGTTGCATCCGGAATAAAACGCACGGTAAATTCCGGCCACTGAAATCTTTGATTTGCGTCAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTTTCCTGCAATCGTTGCAACAAGAAGAGCTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCGAAGTGGCGGTGTTCGTGTGGTACGACATTTTCCCGTAAGGATAAGCTATTTGGTCATATGGCGTTGTTCGAAGGCCACATGCCGGCGGTGGCGGATGACGACGATGGAAAGGGAAAAGCATCTGGCGTCGGCGCCGCCGCGACCCCTGAGAGGGACTGTAATCAGATTTCGAAGGATGTTAATTTCCCAAACGCATCGGTTGGTTCGGATGATGGATCTTTTGAATTGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTTTGCAAGAGGTGTTGGGATTCTCGGATAATTTCGATTCGGATTCCGAATGGAAATTTTGTGGTTTTTGA 1080 50.93 MEFSGDPRVPLHNLSTIRSRMDAVQIFLSDNIDREIRISNQQMDAVSSEIATAIQQIIVNGAALLACAQAKTPNMPDLTGSTTPSSVTGKSIVEMKVEAVDEIARLESEEFDADCEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPPLDVVAAATADHRAKRTRFSCPYDGCIRNKTHGKFRPLKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVADDDDGKGKASGVGAAATPERDCNQISKDVNFPNASVGSDDGSFELFLDGFGSIENHCLQEVLGFSDNFDSDSEWKFCGF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69976306 69977385 - Hsped.04g14320.1 Hepe04g1432 568570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1432 359 Gene3D Classic Zinc Finger 131 154 - -
Hepe04g1432 359 Pfam Zinc finger, C2H2 type 131 153 IPR013087 -
Hepe04g1432 359 SUPERFAMILY beta-beta-alpha zinc fingers 128 154 IPR036236 -
Hepe04g1432 359 SMART c2h2final6 185 218 IPR013087 -
Hepe04g1432 359 SMART c2h2final6 251 275 IPR013087 -
Hepe04g1432 359 SMART c2h2final6 223 245 IPR013087 -
Hepe04g1432 359 SMART c2h2final6 131 153 IPR013087 -
Hepe04g1432 359 Gene3D Classic Zinc Finger 210 280 - -
Hepe04g1432 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Hepe04g1432 359 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Hepe04g1432 359 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 107 301 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Hepe04g1432 359 FunFam Zinc finger 45-like 128 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1432 Hepe-Chr4:69976306 Hepe10g0914 Hepe-Chr10:30748048 1.25e-67 dispersed
Hepe04g1432 Hepe-Chr4:69976306 Hepe06g0068 Hepe-Chr6:2059868 1.73e-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55453 PF00096 zf-C2H2 0.00015 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1432 - - - 0.0