Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1468 ATGGCGGGTCAGCCGTCAGATTCTTCCCCTCTTATTCCACCGGCGCCGATCACCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGACCAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGGACATCAAAGTACGTTCATCGAGAATGTCTGGATCATTGGCGAGCTGTGAAGGAAGGGTTTGCTTTTGCTCATTGTACCACCTGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTCGCTGATAGGAAATGGCGAACCCTGAAGTTTCGATTTTTTGTGACGAGAGACATTATATTTATATTTTTGGCAGTTCAACTTGTAATTGCTTCTCTGGGATATTTGATGTATTTTATAGATGGTTGTCAACATTACTGGCTGCGTCTTACTTGGGGTTTCGATAACAAAATTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAATGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGCTGTCACCCTGGACTATGTGCAGACTGTCATTTACCTGGTACTCTTTGTATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGTATAGCAACCGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCTGGACTGCCAATATTATTTATAATGGCTTTGATTGTTCTTGGTTTGTTTACCGTGATTGGGATATTCTACAGTGTCTTGGTGGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCAAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGACTGGTTACCTCCACCACTTCCAGCAGAGCACGTTCAACAGCTCAAAACACTTGGCCTTCTATGA 972 43.62 MAGQPSDSSPLIPPAPITDPSEIDLEAGQGDQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLMYFIDGCQHYWLRLTWGFDNKISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPILFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70300893 70305729 - Hsped.04g14680.1 Hepe04g1468 568606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1468 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270(InterPro)
Hepe04g1468 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 322 - -
Hepe04g1468 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Hepe04g1468 323 SMART ringv_2 34 83 IPR011016 GO:0008270(InterPro)
Hepe04g1468 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 95 IPR013083 -
Hepe04g1468 323 SUPERFAMILY RING/U-box 30 87 - -
Hepe04g1468 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1605 Hepe-Chr2:21332757 Hepe04g1468 Hepe-Chr4:70300893 7.82e-40 dispersed
Hepe04g1468 Hepe-Chr4:70300893 Hepe09g0688 Hepe-Chr9:6521258 2.55e-66 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1468 - - - 0.0