Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1489 ATGGCCGCTGTCAATCTCCGACCCGACGACGACAATACAATACTCGTCTCCGACCTCTACAGCCCTGAAATTTACACCCAAATGCTATCCCAACAAGGTACGGCGGAGGGAAGTAAGCCGACGAAACGGAGGAGGAGGAGGAGCAAAGCGAAGGACGGAGCGGAGGCGGCGGTGGGGTTGAAGAAGAGGAAGCTGAGTACAGAGCAAGTAAAGCTTTTGGAAATGAATTTTGGGAGTGAACATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCTCGGCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCCCGGTGGAAGAACAAGAGGCTGGAAGACGAATATACCACTCTACAAAAAGCTCATGATTCTGTTATTCTCCAAAATTCCCATCTTCAATCCGAGATGGCGAAACTTAAAGATGAATTGCAACAAAGGAAGAATGAGATACAACAATTGATAGAAGGAAGCGAGAGAATTTCGAGTAATAGCCCCACCTCTTCGGTGACGATAGATGCAGCGCAACCACCGTATTTGGGAGAGCTATTTTTGGAAGAATATGAGGATGTATTTTATTGCATGCAAGAGAACAATTACTGTCAAGGAATTGAGTGGCTTAATCTTTATATGTAG 654 46.48 MAAVNLRPDDDNTILVSDLYSPEIYTQMLSQQGTAEGSKPTKRRRRRSKAKDGAEAAVGLKKRKLSTEQVKLLEMNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRLEDEYTTLQKAHDSVILQNSHLQSEMAKLKDELQQRKNEIQQLIEGSERISSNSPTSSVTIDAAQPPYLGELFLEEYEDVFYCMQENNYCQGIEWLNLYM 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70530975 70532866 + Hsped.04g14890.1 Hepe04g1489 568627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1489 217 SUPERFAMILY Homeodomain-like 61 123 IPR009057 -
Hepe04g1489 217 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677(InterPro)
Hepe04g1489 217 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677(InterPro)
Hepe04g1489 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 167 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Hepe04g1489 217 Pfam Homeodomain 62 115 IPR001356 GO:0003677(InterPro)
Hepe04g1489 217 Coils Coil 136 167 - -
Hepe04g1489 217 CDD homeodomain 61 117 IPR001356 GO:0003677(InterPro)
Hepe04g1489 217 Gene3D - 57 123 - -
Hepe04g1489 217 Coils Coil 108 128 - -
Hepe04g1489 217 SMART HOX_1 59 120 IPR001356 GO:0003677(InterPro)
Hepe04g1489 217 MobiDBLite consensus disorder prediction 29 58 - -
Hepe04g1489 217 FunFam homeobox-leucine zipper protein ATHB-40 54 124 - -
Hepe04g1489 217 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe04g1489 217 ProSiteProfiles 'Homeobox' domain profile. 61 116 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1489 K09338 - - csv:101216890 312.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1489 Hepe-Chr4:70530975 Hepe05g0324 Hepe-Chr5:3996950 1.42e-23 dispersed
Hepe04g1489 Hepe-Chr4:70530975 Hepe07g0685 Hepe-Chr7:8030936 5.84e-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g927 Blo04g00927 Blo16g00037 Bda04g00064 . . Bpe13g00454 . . Cmo04g00828 . Cma03g00769 Cma07g00504 . Car07g00441 Sed07g1686 Cpe19g00797 . Bhi03g01269 Tan03g1958 Cmetu07g2129 . Hepe04g1489 . . Cla01g01886 Cam01g1978 Cec04g1629 Cco04g1694 Clacu01g1998 Cmu01g1868 Cre04g1550 Cone8ag0797 Cone12ag0756 . Cone9ag1531 Lsi01g00699 . Chy07g01276 Cme08g00826 . Blo06g00125 Bda11g01876 . Bpe10g00106 Bpe06g00054 . Bma06g00130 . Cmo03g00798 . . . . . . . . . . . . . . Cla07g00851 Cam07g0923 Cec07g0983 Cco07g0966 Clacu07g0899 Cmu07g0899 Cre07g1264 . Csa06g03219 Chy02g00668 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002434 2 1 3 1 3 2 2 2 2 2 2 2 3 2 2 1 2 3 3 2 2 2 2 2 2 1 2 3 2 1 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55458 PF00046 Homeodomain 9.90E-17 CL0123 Hepe TF