Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1490 ATGGCGGGCCGTTCCGACGAAGAAGAACACTCTTGCTCTAACTCCAACAACTCCTTCAAGACAATTGATAGTGCTTTCAGTCAGTTCATTGCCGACGATGATTCTGAAGATTTGGGTTCCGACTTCGTCTTTAAGATCGAACCTAGTTTACTCATTGACCTTCGTTGTTTGAAGATTGGTGAAGTTATTGGCGAAGGTTCATGCTCCATTGTCTTTCAAGGACTGTATGATTATCAGCCTGTTGCAGTGAAAATTATACAGCCAAGCAGAACATCAGCTATAAGTCTTGAAAAGAAGGAGAAGTTTCAGAGAGAGGTTTTGTTGCTCTCGAGAGTGAATCATGAGAACGTTATCCAGTTCATTGGCGCTTCTGTAGAACCGACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTGTGGAGCATCCGGCCAGAGACCCCAGATATGAAGCTTTCCTTAAGTTTTGCTCTAGATCTATCACGAGTAATGGCATACTTGCATGCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTGACAGAAGACAAACAACGGATTAAGCTGGCTGACTTTGGGTTGGCTAGAGAGGAAATATCTGGCGAAATGACTACTGAGGCTGGTACTTATCGCTGGATGGCCCCTGAGCTATTTAGCATTGATCCATTGCCTGTTGGAGGTAAGAAATTCTATGATCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAGTTGCTGACAAACAAGACTCCATTCAAGGGCAGAAATAATGTAATGGTAGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAATATCTTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTTACACAAGTCATAGATTCTCTATGCAATCTTCTTCAAACTTTTGTCTTAAAAGAATCTTCACTTCCTAACATGGTGGAAACAGAGGAGAAGGTCGAGTACTGTGCATCAGACACATCGTCTTCTCAGAGCAAGAGAGAGCATAATAAGGCCAGAAGACATAGAAACTCTTCATTCTGTCTCAATTGTTGCTACACATTGTGCATGTCTGATTGA 1137 43.1 MAGRSDEEEHSCSNSNNSFKTIDSAFSQFIADDDSEDLGSDFVFKIEPSLLIDLRCLKIGEVIGEGSCSIVFQGLYDYQPVAVKIIQPSRTSAISLEKKEKFQREVLLLSRVNHENVIQFIGASVEPTLMIITELMRGGTLQKYLWSIRPETPDMKLSLSFALDLSRVMAYLHANGIIHRDLKPSNLLLTEDKQRIKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGKKFYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEYLAPLLQSCWAEDPNGRPEFTQVIDSLCNLLQTFVLKESSLPNMVETEEKVEYCASDTSSSQSKREHNKARRHRNSSFCLNCCYTLCMSD 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70535241 70538441 + Hsped.04g14900.1 Hepe04g1490 568628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1490 378 SMART serkin_6 57 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1490 378 CDD STKc_MAP3K-like 63 315 - -
Hepe04g1490 378 Gene3D Phosphorylase Kinase; domain 1 47 137 - -
Hepe04g1490 378 Pfam Protein tyrosine and serine/threonine kinase 57 315 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1490 378 PANTHER SERINE-THREONINE PROTEIN KINASE 24 317 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Hepe04g1490 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1490 378 Gene3D Transferase(Phosphotransferase) domain 1 138 367 - -
Hepe04g1490 378 SUPERFAMILY Protein kinase-like (PK-like) 50 330 IPR011009 -
Hepe04g1490 378 ProSiteProfiles Protein kinase domain profile. 57 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g1490 378 PRINTS Tyrosine kinase catalytic domain signature 171 189 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1490 378 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1490 378 PRINTS Tyrosine kinase catalytic domain signature 244 266 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g1490 378 PRINTS Tyrosine kinase catalytic domain signature 133 146 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1490 Hepe-Chr4:70535241 Hepe09g0241 Hepe-Chr9:2088187 4.41e-102 dispersed
Hepe04g1490 Hepe-Chr4:70535241 Hepe07g0675 Hepe-Chr7:7855223 5.21e-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72756 PF07714 PK_Tyr_Ser-Thr 3.30E-53 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1490 - - - 0.0