Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1491 ATGAAAGCAGGAGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCTCAGGAAATACCCCCGATACATTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCGACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCATCCTTACCTTTGGGGAAGTCAGCATCATATGATTTCTCCTTATGGGACCCCAGTACCCTATCCAGCTATATATCCTCCTGGGGGAATTTATGCCCATCCCAATATCACTGTGACTCCTGGCTCTGCACCAATTATTGCAGAATATGAAGGAAAATCCTCTGATGGAAAAGAAAGGGCCTCAAAGAAATCCAAGGGCACGTCCGGAAATACTGGTTCAGGTGGCGGTAGGACTGGGGATAGTGGAAAGGTTGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGGTGAAAGTGGCACTGAGGGCTCATCAGAAGGTAGTGATGAGAATGGTAACCAACAGGATTTTGCTGCAAATAAGAAGGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGTGGACCAAATGGCAAGTCTGTGACTGGAAAACCCATCACCTCCATTCCTGCAACTAATCTGAACATGGGAATGGATTTATGGAACACCAATGCTGCCTCGGGGGCTGCAAAAGTGAGAGGAAACGTGGTATCCTCAGCTATTGTTCCAGCAACGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGTGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCAAGATTACGTAAACAGGCGGAGTGTGAAGAATTACAGGGAAGAGTTCAGACATTGAACAACGAGAACCGTACTCTCAGGGATGAGCTACAGAGGCTCTCCGAGGAATGTGAAAAGCTAACTTCAGAAAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGACCGGAGGCATTAGCTAACTTAGAAAAAGAAAAAGGAACCGCTACTCCGGCTGCCCAGTCTCGTGGCGGCGGCGAGAGTAACAACTAA 1104 47.37 MKAGEEGTPSKTSKPPSSSQEIPPIHSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGSQHHMISPYGTPVPYPAIYPPGGIYAHPNITVTPGSAPIIAEYEGKSSDGKERASKKSKGTSGNTGSGGGRTGDSGKVASSSGNDGASQSGESGTEGSSEGSDENGNQQDFAANKKGSFNQMLADGANAQNNTGGPNGKSVTGKPITSIPATNLNMGMDLWNTNAASGAAKVRGNVVSSAIVPATMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQGRVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANLEKEKGTATPAAQSRGGGESNN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70542033 70546063 + Hsped.04g14910.1 Hepe04g1491 568629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1491 367 MobiDBLite consensus disorder prediction 10 28 - -
Hepe04g1491 367 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Hepe04g1491 367 MobiDBLite consensus disorder prediction 108 176 - -
Hepe04g1491 367 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 272 287 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1491 367 Gene3D - 268 323 - -
Hepe04g1491 367 FunFam BZIP transcription factor 267 318 - -
Hepe04g1491 367 MobiDBLite consensus disorder prediction 345 367 - -
Hepe04g1491 367 MobiDBLite consensus disorder prediction 189 210 - -
Hepe04g1491 367 SUPERFAMILY Leucine zipper domain 268 324 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1491 367 Coils Coil 278 333 - -
Hepe04g1491 367 MobiDBLite consensus disorder prediction 267 291 - -
Hepe04g1491 367 Pfam bZIP transcription factor 265 327 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1491 367 CDD bZIP_plant_GBF1 270 320 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1491 367 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 267 330 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1491 367 SMART brlzneu 265 329 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g1491 367 MobiDBLite consensus disorder prediction 1 28 - -
Hepe04g1491 367 PANTHER G-BOX-BINDING FACTOR 3-RELATED 14 358 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Hepe04g1491 367 MobiDBLite consensus disorder prediction 123 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1491 K09060 - - csv:101217128 581.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1491 Hepe-Chr4:70542033 Hepe05g1997 Hepe-Chr5:70427015 8.40e-27 dispersed
Hepe04g1491 Hepe-Chr4:70542033 Hepe06g0987 Hepe-Chr6:57589689 7.29e-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g930 . . Bda04g00063 Bda10g00121 . . . . . . . . Car03g00698 Car07g00439 Sed14g1098 Cpe19g00799 Cpe10g00596 Bhi03g01272 Tan03g1960 Cmetu08g0851 . Hepe04g1491 . . Cla01g01889 Cam01g1979 Cec04g1631 Cco04g1697 Clacu01g1999 Cmu01g1870 Cre04g1551 . . Cone6ag1607 Cone9ag1533 Lsi01g00696 . . Cme08g00828 Blo05g00785 Blo06g00126 . . Bpe10g00107 Bpe06g00053 . . . Cmo03g00796 . . . . . . . . . . . . . . . . . . . . . . Csa06g03222 Chy02g00666 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007671 2 3 2 0 2 0 2 1 1 1 1 0 0 1 1 1 1 2 2 0 1 1 1 1 1 1 1 3 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55459 PF07777 MFMR 2.60E-31 No_clan Hepe TF