Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1493 ATGCCGGCCGATTTGGATGATTCGTCCATAGCTTCAGGGGAGGCTAGCGTTTCTTCTCCTGGAGCGAAATCCGCCGCTAAGAAAAAGCGAAATCTGCCTGGAATGCCAGGTAAATTTGATTTTTCAATTACCCTTTTGAGTTTTTTGAACTTTGTTCGAGAGATTGAACTTGATTTTCCTGTCACAGATCCGGAAGCGGAAGTAATTGCTCTGTCCCCGAAGTCCCTTATGGCCACAAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTTCACCGGCGAGGTCACAATCTTCCCTGGAAACTTCGGCAGAGGTCCAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCACGATCCCTCTAGAGCTCTCGGGGATTTGACTGGGATTAAGAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCCGAGAGTATAAATGTGATTGTGGGACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGTGCAAAAGCTAAGCCTAAGCTGGTGGACAAATCGGATTTAAACTCGAACCCGACAGGCGAATCTCAGGCAGCAGCGGTAAAGCCAAATCCAGAGCCTTCTCCGCCGCCTCCGCCATCACCGCCGGCTCCATCTCCTCCACATTCAACTGATGAGCTAACAACTGTGTTGCCTGTTCCAAGTCAAGAGCTGCCGGAGAATCTCTCGCAATGTATCGAAGAAGCACCGGGTACGACGGGCATGAGTGGGAGCAGCAACAGCAGCAAGAGCGCTAGCAGCAATAGCAGTGCGATGAGTAGCGGATTTGCTGGTTTATTTTCTTCCTCGACTACGTCGATAAGCCACCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAACCATGGCTTGTCCAGATCGCTCATCAGATTATGCACCATCTTCAACCATTGAACCCATTTCTCTCTGTCTTGCAATGAATCAAGGATCACCGATGTTTGGAAATCCCAGCCAAGACCTCCGACAGTACGCACCGGCGCCACAGCCTGCAATGTCCGCTACGGCACTGCTACAAAAAGCGGCTCAAATGGGTGCAGCAGCATCGAATGCCTCTTTGCTTCGTGGTTTGGGCTTAGTATCATCTTCCTCTTCAGCTGCCCCGCAAGAGAGTTTGCCATGGAACCACCCGAGGCAAGTTGAACCAGATGGCATCTCAATCGCTGCAGGGCTCGGCCTCGGACTCCCCTGTGATGGAAACTCCGGATTGAAGGAACTAATGAGGGGAAACCATTCCATGTTCGCCCCAAAACACACCACCCTCGATTTCCTTGGATTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTGGCCGCGCTAATTACATCAGTTGGCAGCGGTGTCGACGTCGCCACAACAACCCGATCGTACGGCGGTGGTGATATATCAGGTCAGGACATGAACAGAAGCAACTGA 1596 50.25 MPADLDDSSIASGEASVSSPGAKSAAKKKRNLPGMPGKFDFSITLLSFLNFVREIELDFPVTDPEAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAKPKLVDKSDLNSNPTGESQAAAVKPNPEPSPPPPPSPPAPSPPHSTDELTTVLPVPSQELPENLSQCIEEAPGTTGMSGSSNSSKSASSNSSAMSSGFAGLFSSSTTSISHQPPRPPAFTDLMQTMACPDRSSDYAPSSTIEPISLCLAMNQGSPMFGNPSQDLRQYAPAPQPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSSSAAPQESLPWNHPRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVATTTRSYGGGDISGQDMNRSN 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70556596 70559542 - Hsped.04g14930.1 Hepe04g1493 568631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1493 531 SMART c2h2final6 82 104 IPR013087 -
Hepe04g1493 531 SMART c2h2final6 123 153 IPR013087 -
Hepe04g1493 531 SMART c2h2final6 158 178 IPR013087 -
Hepe04g1493 531 Gene3D Classic Zinc Finger 62 129 - -
Hepe04g1493 531 MobiDBLite consensus disorder prediction 217 266 - -
Hepe04g1493 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Hepe04g1493 531 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 157 181 - -
Hepe04g1493 531 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 119 153 - -
Hepe04g1493 531 FunFam protein indeterminate-domain 12-like 61 129 - -
Hepe04g1493 531 Gene3D Classic Zinc Finger 136 216 - -
Hepe04g1493 531 MobiDBLite consensus disorder prediction 241 260 - -
Hepe04g1493 531 SUPERFAMILY beta-beta-alpha zinc fingers 81 178 IPR036236 -
Hepe04g1493 531 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 184 221 - -
Hepe04g1493 531 FunFam protein indeterminate-domain 5, chloroplastic-like 136 215 - -
Hepe04g1493 531 Pfam Zinc finger, C2H2 type 82 104 IPR013087 -
Hepe04g1493 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 488 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe04g1493 531 MobiDBLite consensus disorder prediction 1 30 - -
Hepe04g1493 531 MobiDBLite consensus disorder prediction 286 312 - -
Hepe04g1493 531 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1493 Hepe-Chr4:70556596 Hepe10g1107 Hepe-Chr10:43772864 1.61e-101 dispersed
Hepe04g1493 Hepe-Chr4:70556596 Hepe04g1495 Hepe-Chr4:70566490 6.53e-247 proximal
Hepe03g1919 Hepe-Chr3:76272446 Hepe04g1493 Hepe-Chr4:70556596 5.09e-100 transposed
Hepe01g1698 Hepe-Chr1:82072650 Hepe04g1493 Hepe-Chr4:70556596 2.05e-116 wgd
Hepe10g0659 Hepe-Chr10:8737679 Hepe04g1493 Hepe-Chr4:70556596 2.17e-100 wgd
Hepe04g1493 Hepe-Chr4:70556596 Hepe07g0682 Hepe-Chr7:7966054 8.50e-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55460 PF00096 zf-C2H2 0.0054 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1493 K25869 - csv:101217597 683.715