Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1494 ATGAAAAAATCCACAGTAATTACAGGATCGCCATTTTGTTCTTCCGTGCTCGTACCCTTCTTCTTCCTTCTCCTCTCTCTGCCTTCAAACGCTGCCGATGACGGATTGTGGGAAGGCGCCAGGCCGGAGGTGAAGAGAGCCAATGAAAGAAAATCGCTGCTTAAAACAGAGGACGGCGAGATCTCCGCCGTTGATTTCAACGATGGCTCGAGATTTGGACATTACCATCTTCAATTCATTACATTGGAACCCAACTCCCTGTTTCTTCCTGTTCTTGTTCATGCTGACATGGTCTTCTATATCCAAACCGGAAGTGGGAGATTGAATTGGATTGATGATGGGGATTTGAGGGAGGTGGATTTACGGCGGGGAGATGTTTACAGGCTTCATCCAGGCTCTATTTTTTACCTGCAGAGTAGCTTAGAGCCCGAACGTGAAAAGTTTCAAATTTATGCTCTGTTTTCCAGCACTGATGAAGATTCATTCGATCCGGCCATCGGAGCGTACTCCAGTGTCACCGATCTGGTTCGAGGCTTCGACAAGAAAGTTCTCCGTGAAGCTTTCATGGCCCCAGAGGAAGTAATAGAAGAGATAATGAACGCCACGAAGCCGCCGCTGATCGTCCATGCCGGGCCGTTGGCGGGTCGAAGCAAGAAGCCGTCTTCGTCGGCGTCATCGTGGGAGTTGGAAGCTCGGTTCTTGAAAGCCTTCCTAGGAGGAGGCGCAAATGGGATGGGATTGAACAAGAAGAAGAAGAAAGGAGGAATATACAACGTTTATGAAACAGACCCAGATTTTGAAAACTGCAATGGATGGAGTTTGAGTGTAACCAAGAAAGTCTGCCATGAATTGAAGGGCTCCAACATCGGCCTCTTTGTAGTCAACCTCACCGCGGGGTCGATGATGGGTCCCCATTGGAATCGGATAGCGTGGGAGATCGGGATCGTGACGTCGGACGAGCCGGGGGTGGTTAGAGTGGGTTGTCCGAGCACGGCGAAGACTTCAATGTGCAAGAATTGGAGTTTTGTAGGAGGGAAAGGGGATGTGTTTGTGGTGCCGAGGTTCTTTCCAATGGCGCAGATGTCATTCAACAACGGAACGTTTGCTTTCGTGGGGTTTAGCACGATGAACCAACATAATCAGGCGCAGTTCTTTGCTGGAGGTAGCTCGGTGTTGCAGATGATGGACAGGAAAGTGTTGGCATGGTCGTTCGATGTGAATGTGACGACAATCGATCGGTTGTTGGGGGCCAGAGTTGAGTCAGTTATATTGGAGTGTACTTCTTGTGGTGAGGAGGAAGTTAGGAAAATGGAAGAGGAAGCTGAGAGAGAGAGGAAAAGAGAGGAGGAGGAGCAGAGAGAAAGGGAGGAGGAGGAGAGGAAAAGAGAGGAGGAGCAGAGAAAAAGGGAGGAAGAGGAGAGGAAGAGAGAGGAGGAGGAAGCAAGAAAAAGGGAGGAAGAAGAAGCAATAAAAGAGGAAGAGAGGAGGAGAGAGGAGGAGGAAGCAAGAAAAAGGGAGGAAGAAGAAGCAATAAAAGAGGAAGAGAGGAGGAGAGAGGAGGAGGAAGCAAGAAAAAGGGAGGAAGAAGAAGCAAGAAAAGAGGAAGAGAGGAGGAGGGAGGAAGAAGAAGAGAGAAAAAGAGAGGAGGAGGAAGAGAGGGGAGGAAGAAGAAGAGAGGAAGAGGAAGCTAGAAAAAAGGAGAGGAAGAGGGAGAGGGTGAGAAGAGAGGAGGAAGAGGCAGAGAGAGAGGCGGAGAGAGAAGGAAGGGGAGAAAGGGAGGCGGAGAGGGAGGAGGAGGAAGCTAGGGAGAGAGAGGAAAGCCAACAAAGAGAGAGATGGAGGAGACACAAAGAAGCAGAGAGAGAGGAGGAGGAAGAAGAAGGAGAAGAAGTTGCAGTGATTAGAATTTTAAGCCAACTGACATAA 1926 49.38 MKKSTVITGSPFCSSVLVPFFFLLLSLPSNAADDGLWEGARPEVKRANERKSLLKTEDGEISAVDFNDGSRFGHYHLQFITLEPNSLFLPVLVHADMVFYIQTGSGRLNWIDDGDLREVDLRRGDVYRLHPGSIFYLQSSLEPEREKFQIYALFSSTDEDSFDPAIGAYSSVTDLVRGFDKKVLREAFMAPEEVIEEIMNATKPPLIVHAGPLAGRSKKPSSSASSWELEARFLKAFLGGGANGMGLNKKKKKGGIYNVYETDPDFENCNGWSLSVTKKVCHELKGSNIGLFVVNLTAGSMMGPHWNRIAWEIGIVTSDEPGVVRVGCPSTAKTSMCKNWSFVGGKGDVFVVPRFFPMAQMSFNNGTFAFVGFSTMNQHNQAQFFAGGSSVLQMMDRKVLAWSFDVNVTTIDRLLGARVESVILECTSCGEEEVRKMEEEAERERKREEEEQREREEEERKREEEQRKREEEERKREEEEARKREEEEAIKEEERRREEEEARKREEEEAIKEEERRREEEEARKREEEEARKEEERRREEEEERKREEEEERGGRRREEEEARKKERKRERVRREEEEAEREAEREGRGEREAEREEEEAREREESQQRERWRRHKEAEREEEEEEGEEVAVIRILSQLT 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70562744 70565671 + Hsped.04g14940.1 Hepe04g1494 568632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1494 641 SUPERFAMILY RmlC-like cupins 21 418 IPR011051 -
Hepe04g1494 641 Gene3D Jelly Rolls 247 429 IPR014710 -
Hepe04g1494 641 MobiDBLite consensus disorder prediction 433 622 - -
Hepe04g1494 641 PANTHER OS03G0336100 PROTEIN-RELATED 45 417 IPR050253 -
Hepe04g1494 641 Coils Coil 427 611 - -
Hepe04g1494 641 Pfam Cupin 55 190 IPR006045 -
Hepe04g1494 641 Pfam Cupin 257 410 IPR006045 -
Hepe04g1494 641 CDD cupin_7S_vicilin-like_C 264 421 - -
Hepe04g1494 641 CDD cupin_7S_vicilin-like_N 53 210 - -
Hepe04g1494 641 Gene3D Jelly Rolls 38 219 IPR014710 -
Hepe04g1494 641 SMART Cupin_1_3 257 412 IPR006045 -
Hepe04g1494 641 SMART Cupin_1_3 45 196 IPR006045 -
Hepe04g1494 641 MobiDBLite consensus disorder prediction 433 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1494 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1494 Hepe-Chr4:70562744 Hepe08g0869 Hepe-Chr8:7887870 1.15e-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28