Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1495 ATGCCGGCCGATTTCGACAATTCCTCGCCGGCTTCCGCCGAACCCAGTGTCTCCTCCCCCGGCAAACACCCTCCACCGCCCATATCCGCCGCTAAGAAGAAACGAAATCTACCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCGCCGAAGACCCTTATGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTTCACCGACGAGGTCACAATCTTCCATGGAAGCTCCGGCAGAGGTCCAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCACGATCCCTCTAGAGCACTCGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAGTGTTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCCGAGAGTATAAATGCGATTGTGGTACTTTGTTTTCAAGGAGGGATAGCTTCATTACGCATAGAGCTTTTTGTGATGCATTGGCAGAGGAAAGTGGAAAATTTCGGCCTCGGTCTTTGGTGGAAAAACCGGTTTCTGATTCTGACCCGAAAGCTCATTCTCAGAAGGCGGTGGAGCCAAATCCGGAGCCTTCTCCGCCACCTCCGCCGCCGTCACCTCCGGCGGATTCGTCTCCTCCGCAGTCAACTTGTGTCGTGCCATCTGTTTTGCCGATTCAGGGTCAAGTTCTCGAAGATCGACTGGAGAATTCCTCGCCTTATAACGAAGAAGCACCGGCTACAACGGGCATGAGTGGTAGCTGCAGCAGCAACAGCAGTTCGAGTAGCCGATTTGCTAGCTTGTTCGCACCCACAACTACATCAATAAGCCTGCAACCTCCTCGGCCTCCTGCGTTTACCGACTTAATACATGCTATGGCTTGTTCGGATCCCTCGTCCGACTACGTTCCAACGACGAGCGCCGAACCTATTTCTCTATGTCTTTCAACTAGCCATGGGGCATCAATTTTTGGGGCTGCTAGCCAAGACCTCCGGCAGTACACACCAACTCCACAACCTGCAATGTCCGCCACTGCATTACTACAAAAAGCTGCTCAAATGGGAGCAGCAGCATCAAACGCCTCATTGCTTCGCGGGTTGGGATTAGTATCGTCCTCTGCGGCTGTGCCGCAAGAGAGCTTGTCATGGAATCAGAGGCAAGTCGAACCCGATGGCATCTCGATCGCTGCAGGGCTCGGACTCGGACTCCCTTGCGACGGAAACTCAGGATTGAAGGAACTAATGAGGGGAAACCATTCCATATTTGCTCCAAAACACACAACACTCGACTTCCTCGGCCTGGGGATGGCAGCTGGTGGTAGCCCCAACAGTGGACTGGCTGCGCTAATCACGTCGATTGACGTCACCACAACAACCGGATCATACGGAGGTGGTGACATATCCAACAAAGACATGAACAGAAACAATTAA 1509 51.82 MPADFDNSSPASAEPSVSSPGKHPPPPISAAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESGKFRPRSLVEKPVSDSDPKAHSQKAVEPNPEPSPPPPPPSPPADSSPPQSTCVVPSVLPIQGQVLEDRLENSSPYNEEAPATTGMSGSCSSNSSSSSRFASLFAPTTTSISLQPPRPPAFTDLIHAMACSDPSSDYVPTTSAEPISLCLSTSHGASIFGAASQDLRQYTPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSAAVPQESLSWNQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSIFAPKHTTLDFLGLGMAAGGSPNSGLAALITSIDVTTTTGSYGGGDISNKDMNRNN 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70566490 70569314 - Hsped.04g14950.1 Hepe04g1495 568633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1495 502 Gene3D Classic Zinc Finger 115 193 - -
Hepe04g1495 502 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Hepe04g1495 502 FunFam protein indeterminate-domain 12-like 40 108 - -
Hepe04g1495 502 Gene3D Classic Zinc Finger 41 108 - -
Hepe04g1495 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Hepe04g1495 502 SMART c2h2final6 61 83 IPR013087 -
Hepe04g1495 502 SMART c2h2final6 102 132 IPR013087 -
Hepe04g1495 502 SMART c2h2final6 137 157 IPR013087 -
Hepe04g1495 502 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 197 - -
Hepe04g1495 502 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Hepe04g1495 502 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Hepe04g1495 502 MobiDBLite consensus disorder prediction 198 246 - -
Hepe04g1495 502 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Hepe04g1495 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 463 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe04g1495 502 MobiDBLite consensus disorder prediction 220 240 - -
Hepe04g1495 502 MobiDBLite consensus disorder prediction 1 45 - -
Hepe04g1495 502 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Hepe04g1495 502 MobiDBLite consensus disorder prediction 198 216 - -
Hepe04g1495 502 MobiDBLite consensus disorder prediction 263 284 - -
Hepe04g1495 502 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1698 Hepe-Chr1:82072650 Hepe04g1495 Hepe-Chr4:70566490 6.68e-125 dispersed
Hepe03g1458 Hepe-Chr3:71360079 Hepe04g1495 Hepe-Chr4:70566490 9.98e-105 dispersed
Hepe03g2035 Hepe-Chr3:77745861 Hepe04g1495 Hepe-Chr4:70566490 1.84e-106 dispersed
Hepe04g1495 Hepe-Chr4:70566490 Hepe07g0682 Hepe-Chr7:7966054 7.82e-158 dispersed
Hepe04g1493 Hepe-Chr4:70556596 Hepe04g1495 Hepe-Chr4:70566490 6.53e-247 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55461 PF00096 zf-C2H2 0.0051 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1495 K25869 - csv:101217597 788.489