Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1500 ATGCAATTGGCTCGAATTCGATTGACCTGCAAAATCGGAGATTATCCAATCACTACCAAACAGACGCGCGCTGTAACGACGACAATGAAGTGCCCCTACTGTTCGGCGGCGCAGGGGCGGTGCGCCACCTCGAGCTCCGGCAAGTTCATCACAGAGTGCATTTCCTGCGGCCGCGTTGTCGAAGAGCGCCAATTCCAGCCTCACCACCTCTTCCACCTTCGCGCTCAAGACAACCCCCTTTGCCTCGTCACCTCCGACCTTCCGACCCCTCCGGTCCACCACCAGCCCGATCAGGTTCTGGATCCTTTCGAGCCCACCGGCTTCATTACAGCCTTCTCCACATGGTCCTTGGAGCACACTCCACTCTTCTTCCGATCCTGCTTCTCCTTCTCCGGCCACCTTGCGGAGCTCGAGCGCATCCTAGAGTCTACCTCCTCATCCAATTTGCCGTCCTCATCGACGGTCGTGGTCGATAACCTTAGGGCTTATATGCAGATTATCGATGTGGCTTCTCTTTTGGGGTTGGATTACTATATTTCCGAGCACGCGTTTAAGTTGTTTAGAGATTGTTGTTCGGCTACTTGTTTAAGGAACCGGAGCGTTGAGGCGCTTGCCACTGCTGCCCTTGTGCAGGCAATTAGGGAGGCCCAGGAACCCCGAACTCTTCAGGAAATCTCCATTGCAGCCAATGTACCTCAAAAAGAGATAGGAAAGTACATAAAGATTTTGGGAGAAGCTTTGCAATTAAGTCAACCCATCAACAGCAATTCCATATCAGTTCATATGCCAAGGTTCTGCACGCTTCTCCAACTCAATAAATCTGCTCAGGAACTGGCAACTCATATCGGCGAAGTTGTCATCAACAAATGCTTCTGCACTCGCAGGAATCCCATTAGCATCTCGGCTGCTGCTATATATTTAGCTTGCCAATTAGAAGACAAGCGGAAGACACAAGCAGAAATTTGTAAGGTTACAGGTCTCACTGAAGTCACCCTCCGGAAAGTCTACAAAGAGCTACTAGAGAATTGGGATGATTTGCTTCCGTCTAATTACACTCCTGCTGTACCTCCAGAAAGGGCATTTCCCACAACTGTAATTGCTTCAGGCCGTACATCAGCTCCTAAAGTTGATGCATTTGAAGGGGCTTCTTTAGAGAAAGACAAACAGATTGAAACTAAACCTAATATATCCACCGAGATCTCAGACATGGGTCATCCATCCAGAGTCAAAGAAGATAGTGAGAGTAAATTTGTGTCCCGTGGGATGTATAACCCTGTAACCAACAAGTCATCAACTTTTTGTCAACCACAGCCTCCTAAAGGGAATTCCGTTGCAAGTAGGAAAGAAGAATCTAAGTGA 1359 48.71 MQLARIRLTCKIGDYPITTKQTRAVTTTMKCPYCSAAQGRCATSSSGKFITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLPTPPVHHQPDQVLDPFEPTGFITAFSTWSLEHTPLFFRSCFSFSGHLAELERILESTSSSNLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRTSAPKVDAFEGASLEKDKQIETKPNISTEISDMGHPSRVKEDSESKFVSRGMYNPVTNKSSTFCQPQPPKGNSVASRKEESK 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70608710 70612321 + Hsped.04g15000.1 Hepe04g1500 568638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1500 452 SUPERFAMILY Cyclin-like 161 251 IPR036915 -
Hepe04g1500 452 SMART cyclin_7 260 341 IPR013763 -
Hepe04g1500 452 SMART cyclin_7 164 245 IPR013763 -
Hepe04g1500 452 Gene3D - 160 251 - -
Hepe04g1500 452 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 29 358 IPR000812 GO:0005634(PANTHER)|GO:0006352(PANTHER)|GO:0006352(InterPro)|GO:0017025(PANTHER)|GO:0070897(InterPro)|GO:0097550(PANTHER)
Hepe04g1500 452 FunFam Transcription initiation factor IIB 260 357 - -
Hepe04g1500 452 PRINTS Transcription initiation factor IIB signature 261 279 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Hepe04g1500 452 PRINTS Transcription initiation factor IIB signature 295 311 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Hepe04g1500 452 PRINTS Transcription initiation factor IIB signature 206 225 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Hepe04g1500 452 PRINTS Transcription initiation factor IIB signature 46 66 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Hepe04g1500 452 PRINTS Transcription initiation factor IIB signature 232 247 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Hepe04g1500 452 PRINTS Transcription initiation factor IIB signature 327 341 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Hepe04g1500 452 SUPERFAMILY Cyclin-like 258 356 IPR036915 -
Hepe04g1500 452 MobiDBLite consensus disorder prediction 420 444 - -
Hepe04g1500 452 MobiDBLite consensus disorder prediction 396 452 - -
Hepe04g1500 452 Gene3D - 260 356 - -
Hepe04g1500 452 CDD CYCLIN_TFIIB_archaea_like_rpt2 257 343 - -
Hepe04g1500 452 Pfam Transcription factor TFIIB repeat 260 341 IPR013150 GO:0017025(InterPro)
Hepe04g1500 452 Pfam Transcription factor TFIIB repeat 162 243 IPR013150 GO:0017025(InterPro)
Hepe04g1500 452 FunFam Transcription initiation factor TFIIB 160 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1500 K03124 - - csv:101217129 803.512
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g949 Blo04g00921 . . . Bpe15g00434 . . . . . Cma03g00760 . Car03g00694 . Sed14g1109 . Cpe10g00603 Bhi03g01283 Tan03g1969 Cmetu08g1776 . Hepe04g1500 . . Cla01g01897 Cam01g1987 Cec04g1638 Cco04g1704 Clacu01g2006 Cmu01g1877 Cre04g1558 . . . . Lsi01g00685 . . Cme08g00838 . . . . . . . . . Cmo03g00787 . . . . . . . . . . . . . . . . . . . . . . Csa06g03230 Chy02g00658 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29