Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g1516 ATGATGCAACGCTGCGGCAGCTACCAATGCTACTCGGCAGGAGAGTGTTCTTGTGGTGCGTTTTATGCTCAGCAGCCCAGCTACTTCTCCATGCCTGCCTACAACAATTACTATGAATCTGAACATTATTCTTTCGACTCCTCGTCTCCCGTCGATTGTACGCTGTCTCTTGGAACGCCGTCCACTCGTATGACCGAGTACGACCAGAAACGCCGCGAGGAACACCAATCCGCTTCTAATTTTGGCTGGGATTTGCCTCGTGCCAAACATGCTCCGTCCTCCAAGAGTAGCCGCCGTAGTGGCGGCCATAGCGGCGGCGGTGGTGATAAATCCAGTGCCAATGGTGACCAAATGTTTGCTCGCCATTGCGCCAATTGCGACACCACCACCACCCCCCTCTGGCGTAACGGCCCTAGTGGCCCTAAGTCGTTATGCAATGCCTGCGGCATTAGATACAAGAAGGAAGAAAGAAAAGCAGCGAGTTCGGGGCAGCAGGCGAATTCGATGTATAGGAACGAGGCGAGCTCATGGCTGCAGCATCATTCTCACAGCCAAAAAACGCCGAGATTCCAACATGGCATTACCAATGATCTCAATCCCGGCGTTGCTTTTCTCTCATGGACTCTCAATGACACAGAGCAACCTCAGCTTTACTATGATTTCACAACTTGA 672 52.08 MMQRCGSYQCYSAGECSCGAFYAQQPSYFSMPAYNNYYESEHYSFDSSSPVDCTLSLGTPSTRMTEYDQKRREEHQSASNFGWDLPRAKHAPSSKSSRRSGGHSGGGGDKSSANGDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYRNEASSWLQHHSHSQKTPRFQHGITNDLNPGVAFLSWTLNDTEQPQLYYDFTT 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70712151 70712916 + Hsped.04g15160.1 Hepe04g1516 568654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g1516 223 CDD ZnF_GATA 123 154 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1516 223 PANTHER GATA TRANSCRIPTION FACTOR 18 2 220 - -
Hepe04g1516 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 158 - -
Hepe04g1516 223 Pfam GATA zinc finger 123 157 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1516 223 Gene3D - 119 189 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe04g1516 223 MobiDBLite consensus disorder prediction 63 114 - -
Hepe04g1516 223 ProSitePatterns GATA-type zinc finger domain. 123 148 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1516 223 ProSiteProfiles GATA-type zinc finger domain profile. 117 153 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g1516 223 SMART GATA_3 117 174 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g1516 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1516 Hepe-Chr4:70712151 Hepe09g0870 Hepe-Chr9:8577509 2.06e-13 dispersed
Hepe07g0717 Hepe-Chr7:8616550 Hepe04g1516 Hepe-Chr4:70712151 1.80e-34 transposed
Hepe08g0087 Hepe-Chr8:672440 Hepe04g1516 Hepe-Chr4:70712151 1.53e-12 transposed
Hepe04g1516 Hepe-Chr4:70712151 Hepe07g0688 Hepe-Chr7:8121845 1.72e-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g976 Blo04g00918 Blo16g00045 . . Bpe15g00429 Bpe13g00444 . . . . . Cma07g00487 Car03g00682 Car07g00427 Sed14g1121 Cpe19g00810 Cpe10g00615 Bhi03g01300 Tan03g1982 Cmetu07g2099 . Hepe04g1516 . . Cla01g01911 Cam01g1998 Cec04g1653 Cco04g1715 Clacu01g2017 Cmu01g1891 Cre04g1567 . . . . Lsi01g00673 . Chy07g01246 . . . Bda11g01866 . . . Bma03g00990 . . Cmo03g00775 Cmo07g00485 . . . . . . . . . . . . . . . . . . . . . . Chy02g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002166 2 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 2 2 2 2 2 4 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55463 PF00320 GATA 3.10E-18 CL0167 Hepe TF